当前解析结果
SmilChr02G003371| 统一新 Gene ID | SmilChr02G003371 |
|---|---|
| 名称 | SmilChr02G003371 |
| 描述 | aldehyde oxidase GLOX-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54839587 - 54841481 / + |
| NCBI Gene ID | LOC131010332 |
|---|---|
| GeneID | 131010332 |
| locus_tag | - |
| NCBI Name | LOC131010332 |
| 原始查询 | SmilChr02G003371 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | aldehyde oxidase GLOX-like |
| 产物 | aldehyde oxidase GLOX-like |
| Arabidopsis | AT1G75620 (AT1G75620)glyoxal oxidase-related protein [Source:NCBI gene (formerly Entrezgene);Acc:843897] identity=62.1; qcov=0.985; evalue=0; confidence=high |
| Rice | Os03g0258900- identity=59; qcov=1; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF07250 (Glyoxal_oxid_N); PF09118 (GO-like_E_set) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010332 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057793790.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793790.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793790.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793790.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793790.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54839719 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:54839755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:54839761 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:54839806 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B42,B43,B65,B72 |
Chr2:54839818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:54839872 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:54839908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B5 |
Chr2:54839917 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:54839956 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:54839998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr2:54840001 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:54840058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793790.1PF07250
Glyoxal_oxid_N 40-425 aa
PF09118
GO-like_E_set 434-540 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793790.1 |
Pfam | PF07250 |
Glyoxal_oxid_N | Repeat | 40 | 425 | 8.7e-187 | 621.2 | Glyoxal oxidase N-terminus |
XP_057793790.1 |
Pfam | PF09118 |
GO-like_E_set | Domain | 434 | 540 | 3e-25 | 89.1 | Galactose oxidase-like, Early set domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。