当前解析结果
SmilChr02G003373| 统一新 Gene ID | SmilChr02G003373 |
|---|---|
| 名称 | SmilChr02G003373 |
| 描述 | lysine-specific histone demethylase 1 homolog 3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 54870033 - 54880559 / + |
| NCBI Gene ID | LOC131010304 |
|---|---|
| GeneID | 131010304 |
| locus_tag | - |
| NCBI Name | LOC131010304 |
| 原始查询 | SmilChr02G003373 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | lysine-specific histone demethylase 1 homolog 3 |
| 产物 | lysine-specific histone demethylase 1 homolog 3 |
| Arabidopsis | AT4G16310 (LDL3)LSD1-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:827325] identity=56.1; qcov=0.716; evalue=0; confidence=high |
| Rice | Os10g0532100 (OsHDMA704)- identity=56; qcov=0.463; evalue=0; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0016491 (oxidoreductase activity) |
| KEGG | - |
| Pfam | PF00890 (FAD_binding_2); PF01266 (DAO); PF01494 (FAD_binding_3); PF01593 (Amino_oxidase); PF04433 (SWIRM); PF13450 (NAD_binding_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010304 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793742.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057793742.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057793742.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057793742.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057793742.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:54870627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B93,C2,C71 |
Chr2:54870709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54870776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54870817 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:54870844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54870853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54870899 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54870997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54871007 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,B21 |
Chr2:54871013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr2:54871107 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B130,B136,B139 |
Chr2:54871122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793742.1PF04433
SWIRM 651-730 aa
PF01494
FAD_binding_3 909-941 aa
PF01266
DAO 910-944 aa
PF00890
FAD_binding_2 910-947 aa
PF13450
NAD_binding_8 912-968 aa
PF01593
Amino_oxidase 918-1398 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793742.1 |
Pfam | PF04433 |
SWIRM | Domain | 651 | 730 | 5.8e-14 | 52.8 | SWIRM domain |
XP_057793742.1 |
Pfam | PF01494 |
FAD_binding_3 | Domain | 909 | 941 | 3.2e-05 | 24.0 | FAD binding domain |
XP_057793742.1 |
Pfam | PF01266 |
DAO | Domain | 910 | 944 | 1.4e-06 | 28.8 | FAD dependent oxidoreductase |
XP_057793742.1 |
Pfam | PF00890 |
FAD_binding_2 | Domain | 910 | 947 | 0.00013 | 22.0 | FAD binding domain |
XP_057793742.1 |
Pfam | PF13450 |
NAD_binding_8 | Domain | 912 | 968 | 6.1e-14 | 52.8 | NAD(P)-binding Rossmann-like domain |
XP_057793742.1 |
Pfam | PF01593 |
Amino_oxidase | Domain | 918 | 1398 | 1.1e-85 | 289.3 | Flavin containing amine oxidoreductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。