Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003374`

染色体: Chr02 坐标: 54884591-54887300 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003374`
名称	SmilChr02G003374
描述	tubby-like F-box protein 5
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54884591 - 54887300 / `+`

ID 对照

NCBI Gene ID	`LOC131010344`
GeneID	`131010344`
locus_tag	`-`
NCBI Name	`LOC131010344`
原始查询	`SmilChr02G003374`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tubby-like F-box protein 5
产物	tubby-like F-box protein 5
Arabidopsis	`AT1G47270` (TLP6) tubby like protein 6 [Source:NCBI gene (formerly Entrezgene);Acc:841130] identity=58.4; qcov=1.02; evalue=3.15e-120; confidence=high
Rice	`Os02g0705300` (OsTLP8) - identity=61.4; qcov=1.01; evalue=7.47e-132; confidence=high
GO	-
KEGG	-
Pfam	PF01167 (Tub)
InterPro	-
eggNOG	-
NR	GeneID:131010344

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057793813.1`
2	Cytoplasm	细胞质	0.80000	`XP_057793814.1`
3	Cytosol	细胞质基质	0.60000	`XP_057793814.1`
4	Chromosome	染色体	0.00000	`XP_057793813.1`
5	Centromere	着丝粒	0.00000	`XP_057793813.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54885537`	`TAG`	`T`	2bp_deletion	frameshift_variant	1	A7
`Chr2:54885537`	`TAG`	`T`	2bp_deletion	CDS_variant	1	A7
`Chr2:54885550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr2:54885551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,B72
`Chr2:54885569`	`A`	`AGT`	2bp_insertion	frameshift_variant	3	B122,B132,B53
`Chr2:54885569`	`A`	`AGT`	2bp_insertion	CDS_variant	3	B122,B132,B53
`Chr2:54885623`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B93,C2,C71
`Chr2:54885642`	`T`	`TGA`	2bp_insertion	frameshift_variant	5	A18,B127,C36,C54,C74
`Chr2:54885642`	`T`	`TGA`	2bp_insertion	CDS_variant	5	A18,B127,C36,C54,C74
`Chr2:54885645`	`TTG`	`T`	2bp_deletion	frameshift_variant	5	A18,B127,C36,C54,C74
`Chr2:54885645`	`TTG`	`T`	2bp_deletion	CDS_variant	5	A18,B127,C36,C54,C74
`Chr2:54885669`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793813.1

409 aa

204

409

Tub

PF01167 Tub 109-404 aa

XP_057793814.1

303 aa

152

303

Tub

PF01167 Tub 3-298 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793813.1`	Pfam	`PF01167`	Tub	Domain	109	404	1.5e-93	313.9	Tub family
`XP_057793814.1`	Pfam	`PF01167`	Tub	Domain	3	298	5.3e-94	315.4	Tub family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937830.1
TATTGAAAAAAAGAAATGATGGGCCCATTACTCCTCTCTCTCTCTCTCCCTCCAATTTATCACTCTTTCTCTTTCTATCATACACCCGATCGTTAGTTTTAACGACCATGAAAGGGGCACTTAAAAATGATCATCAGCCTCTAAAAGATTATAAGAGAAGCACAAAATCAATCGAGACACACACAACAGAGAGTTTTGGAGAGTCTGAGAAACGCTTTCAGATATCCTTTTGTCACCAGTGTCGGTGCTGCCACTGCGTT...

XM_057937831.1
GCCCATTACTCCTCTCTCTCTCTCTCCCTCCAATTTATCACTCTTTCTCTTTCTATCATACACCCGATCGTTAGTTTTAACGACCATGAAAGGGGCACTTAAAAATGATCATCAGCCTCTAAAAGATTATAAGAGAAGCACAAAATCAATCGAGACACACACAACAGAGAGTTTTGGAGAGTCTGAGAAACGCTTTCAGATATCCTTTTGTCACCAGTGTCGGTGCTGCCACTGCGTTACCTCCTTTCTATACACTTTTC...

CDS

2 records

下载 CDS FASTA

LOC131010344
ATGTCATTTATATCCATTTTAAGAGATCTCAAGGGGAAAATGGGCATAGATGAGAAGCTAGAGCAGGAATGCGGAAGAAACATTGATTTTAGTGTTGAGGGCTCGTCGTCTTCTTCATATCCAGTGGTGGAGCAAAGCCAGTGGGCAAGCTTGGAACCGGAGTTTTTTGTTGATATCATTGGTAGAGTAGGGGCTGATGAGACTGCGTGGCCAGCTCGAAGAGCTGTGGTGTGTTGTGCTGCTGTTTGCAAGTCTTGGAG...

LOC131010344
ATGTCCCTGAAGCAGCCGGGACCAAGGGATTCTCAGATTCAGTGCTTCATCAGAAGGGAAAGGGCAACATCGACTTATAGGTTATACCTAGGCTTAAGCCCTGCTATTTCGGGGGATGCAAGTAAGTTGCTGTTAGCAGCAAAAAAGATCAAAAGAGCCACGAAAATAGATTTTGTCATATCTTTTGCTGCAAAAGATTTTTCGCACACCAGTGATAATTATGCAGGCAAACTGAGGTTCAACTTTTTCGGCTCCAAATT...

Protein

2 records

下载 Protein FASTA

XP_057793813.1
MSFISILRDLKGKMGIDEKLEQECGRNIDFSVEGSSSSSYPVVEQSQWASLEPEFFVDIIGRVGADETAWPARRAVVCCAAVCKSWREIVREVVQTPEQCGLLTFPMSLKQPGPRDSQIQCFIRRERATSTYRLYLGLSPAISGDASKLLLAAKKIKRATKIDFVISFAAKDFSHTSDNYAGKLRFNFFGSKFYIHDSQPPWCNTLIQSHGWSWKRISAEKVAPRIPICNFNVATIAYELNVLRTRGPRRMQCTMHMIPV...

XP_057793814.1
MSLKQPGPRDSQIQCFIRRERATSTYRLYLGLSPAISGDASKLLLAAKKIKRATKIDFVISFAAKDFSHTSDNYAGKLRFNFFGSKFYIHDSQPPWCNTLIQSHGWSWKRISAEKVAPRIPICNFNVATIAYELNVLRTRGPRRMQCTMHMIPVSSTQKGGSAPTPATFSYGLDETFSPLTASEVRKEDSASDVPIRGKSKQLNSSIDEPLILKNKTPRWHEQLQCWCLNFRGRVTVASVKNFQLVAVGDPSENAPAPEQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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