Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003385`

染色体: Chr02 坐标: 54958479-54962385 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003385`
名称	SmilChr02G003385
描述	uncharacterized SmilChr02G003385
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	54958479 - 54962385 / `-`

ID 对照

NCBI Gene ID	`LOC131010323`
GeneID	`131010323`
locus_tag	`-`
NCBI Name	`LOC131010323`
原始查询	`SmilChr02G003385`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0595300; species=rice; confidence=high
产物	hit=Os01g0595300; species=rice; confidence=high
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=47.9; qcov=0.94; evalue=0; confidence=high
Rice	`Os01g0595300` - identity=70.4; qcov=0.903; evalue=0; confidence=high
GO	GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131010323

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793773.1`
2	Chromosome	染色体	0.00000	`XP_057793773.1`
3	Centromere	着丝粒	0.00000	`XP_057793773.1`
4	Chromatin	染色质	0.00000	`XP_057793773.1`
5	Telomere	端粒	0.00000	`XP_057793773.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:54958746`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:54958776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:54959346`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr2:54959707`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B41
`Chr2:54959712`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:54959799`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:54959988`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:54960182`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C24,C73
`Chr2:54960270`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:54960510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B93,C2,C71
`Chr2:54960543`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,C1,C41,C8
`Chr2:54960575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A22,B14,B23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793773.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

XP_057793774.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

XP_057793775.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

XP_057793776.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

XP_057793777.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

XP_057793778.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

XP_057793779.1

618 aa

309

618

DBD_Tnp_Mut

MULE

SWIM

PF03108 DBD_Tnp_Mut 43-107 aa PF10551 MULE 239-336 aa PF04434 SWIM 490-519 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793773.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793773.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793773.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger
`XP_057793774.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793774.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793774.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger
`XP_057793775.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793775.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793775.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger
`XP_057793776.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793776.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793776.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger
`XP_057793777.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793777.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793777.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger
`XP_057793778.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793778.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793778.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger
`XP_057793779.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	43	107	8.7e-24	83.7	MuDR family transposase
`XP_057793779.1`	Pfam	`PF10551`	MULE	Domain	239	336	1.8e-15	57.8	MULE transposase domain
`XP_057793779.1`	Pfam	`PF04434`	SWIM	Domain	490	519	3.4e-10	39.9	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057937790.1
GTTCTATAAAATTAAAGCTCGGCCAACGTAATCCTCTTTATTCCTCTCTTCTCAATTTTCACTCTCCTTTCTCTCTTATTTTCTCACCCGCCTCTCCCGCCGGCCGCCTCTCCCGCCGGATTATCCCGCCTAAATCTGCTTCTTCTTCTTCTTCTCCATTCATCGACACGACATATATATCTCCAAGATAGCTGCTTGAAGATTGCGGCTTGCAGAAATCTTAGTGGTTCAAGTGGCTTATGGTGGATTTTTCTTGAAGT...

XM_057937792.1
CTATAAAATTAAAGCTCGGCCAACGTAATCCTCTTTATTCCTCTCTTCTCAATTTTCACTCTCCTTTCTCTCTTATTTTCTCACCCGCCTCTCCCGCCGGCCGCCTCTCCCGCCGGATTATCCCGCCTAAATCTGCTTCTTCTTCTTCTTCTCCATTCATCGACACGACATATATATCTCCAAGCTGCTTGAAGATTGCGGCTTGCAGAAATCTTAGTGGTTCAAGTGGCTTATGGTGGATTTTTCTTGAAGTATTTGGT...

CDS

7 records

下载 CDS FASTA

LOC131010323
ATGGCTGAACAAGGCTTATCCGTAGTGTCCAGTGCAAATGCAATTGTTGCTCTGCCCGGCCACTTGGCCGAAGATGTTTATATTCCGGTTTCTAGTATGAATGCAACTGTATCTTTGGCAAGTCAGACATTGGCGGTTGGGCAGGAGTTCCCGGATGTGGATACCTGTAGGAGAACATTGAAGGATATAGCCATAGCATTGCATTTTGAGATTCGGATAGTGAAATCTGATAGGAGTAGGTTTATAGCTAAGTGTTCCAA...

Protein

7 records

下载 Protein FASTA

XP_057793773.1
MAEQGLSVVSSANAIVALPGHLAEDVYIPVSSMNATVSLASQTLAVGQEFPDVDTCRRTLKDIAIALHFEIRIVKSDRSRFIAKCSKDGCPWRVHVAKLPGVPTFTIRTLHAEHTCEGVQNLHHQQASVGWVARSMEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSMAALHGTYEEGFKLLPAYCEQIRKTNPGSIASVVATGQENSFQRLFVSYRAAIYGFINACRPLVELDRVHLKGKYLGTLFCAAAI...

XP_057793774.1
MAEQGLSVVSSANAIVALPGHLAEDVYIPVSSMNATVSLASQTLAVGQEFPDVDTCRRTLKDIAIALHFEIRIVKSDRSRFIAKCSKDGCPWRVHVAKLPGVPTFTIRTLHAEHTCEGVQNLHHQQASVGWVARSMEARIRDNPQYKPKEILQDIRDQHGVAVSYMQAWRGKERSMAALHGTYEEGFKLLPAYCEQIRKTNPGSIASVVATGQENSFQRLFVSYRAAIYGFINACRPLVELDRVHLKGKYLGTLFCAAAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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