Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003393`

染色体: Chr02 坐标: 55042060-55047071 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003393`
名称	SmilChr02G003393
描述	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55042060 - 55047071 / `+`

ID 对照

NCBI Gene ID	`LOC131010317`
GeneID	`131010317`
locus_tag	`-`
NCBI Name	`LOC131010317`
原始查询	`SmilChr02G003393`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic
产物	protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6%2C chloroplastic
Arabidopsis	`AT5G42480` (ARC6) Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834255] identity=57.6; qcov=1.04; evalue=0; confidence=high
Rice	`Os02g0122400` - identity=52.7; qcov=0.966; evalue=0; confidence=high
GO	GO:0009706 (chloroplast inner membrane); GO:0010020 (chloroplast fission)
KEGG	-
Pfam	PF13355 (ARC6-like_IMS); PF23468 (ARC6); PF25515 (Arm_PDR)
InterPro	-
eggNOG	-
NR	GeneID:131010317

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057793761.1`
2	Chloroplast membrane	叶绿体膜	0.80000	`XP_057793761.1`
3	Chloroplast stroma	叶绿体基质	0.40000	`XP_057793761.1`
4	Chloroplast thylakoid	类囊体	0.40000	`XP_057793762.1`
5	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057793761.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55042147`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:55042358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C55
`Chr2:55042459`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:55043539`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:55044225`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:55044375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B1,B19,B20
`Chr2:55044451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr2:55044931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B11,C55
`Chr2:55045054`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B70,C45,C8
`Chr2:55045092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:55045244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B82,C1,C41,C83
`Chr2:55045295`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A6,B26,B93,C2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793761.1

789 aa

394

789

Arm_PDR

ARC6

ARC6-like_IMS

PF25515 Arm_PDR 159-303 aa PF23468 ARC6 320-515 aa PF13355 ARC6-like_IMS 667-781 aa

XP_057793762.1

650 aa

325

650

Arm_PDR

ARC6

PF25515 Arm_PDR 159-303 aa PF23468 ARC6 320-515 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793761.1`	Pfam	`PF25515`	Arm_PDR	Repeat	159	303	9.4e-52	175.7	Plastid division regulator ARM repeat
`XP_057793761.1`	Pfam	`PF23468`	ARC6	Repeat	320	515	8.6e-90	300.0	Plastid division regulator alpha solenoid domain
`XP_057793761.1`	Pfam	`PF13355`	ARC6-like_IMS	Domain	667	781	1.8e-35	122.7	ARC6-like, IMS domain
`XP_057793762.1`	Pfam	`PF25515`	Arm_PDR	Repeat	159	303	6.6e-52	176.2	Plastid division regulator ARM repeat
`XP_057793762.1`	Pfam	`PF23468`	ARC6	Repeat	320	515	5e-90	300.7	Plastid division regulator alpha solenoid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009096529.1
CTGCCCCAAAAATGGAAGCTCTTACGCAGCTGAGCATTGCACCCTACCCCCGTCGCCTCCTCTCACCTCCACCCAACAGAAAACCTCACTTTAAACCTAGCGCCGCCGTCAGCGGCGGCCCCACCACCAGCAGATGGGCCGATCGCCTCTTCGCCGACTTCCAATTCCTGCCTTCCCCGTCAGACACTCCAGACGTCGCAATCTCTGCGCCGCCTCCGCCTCTTCCTTCCCTCCCGGAGCGCCTCGTTCCAATGCCGCTA...

XM_057937778.1
ATAGCAGGAGTATTTCATTTTCGTTTATCTATTGGTATAGTAAGTAAGAGTCACTGCCCCAAAAATGGAAGCTCTTACGCAGCTGAGCATTGCACCCTACCCCCGTCGCCTCCTCTCACCTCCACCCAACAGAAAACCTCACTTTAAACCTAGCGCCGCCGTCAGCGGCGGCCCCACCACCAGCAGATGGGCCGATCGCCTCTTCGCCGACTTCCAATTCCTGCCTTCCCCGTCAGACACTCCAGACGTCGCAATCTCTG...

CDS

2 records

下载 CDS FASTA

LOC131010317
ATGGAAGCTCTTACGCAGCTGAGCATTGCACCCTACCCCCGTCGCCTCCTCTCACCTCCACCCAACAGAAAACCTCACTTTAAACCTAGCGCCGCCGTCAGCGGCGGCCCCACCACCAGCAGATGGGCCGATCGCCTCTTCGCCGACTTCCAATTCCTGCCTTCCCCGTCAGACACTCCAGACGTCGCAATCTCTGCGCCGCCTCCGCCTCTTCCTTCCCTCCCGGAGCGCCTCGTTCCAATGCCGCTAGATTTCTATCG...

Protein

2 records

下载 Protein FASTA

XP_057793761.1
MEALTQLSIAPYPRRLLSPPPNRKPHFKPSAAVSGGPTTSRWADRLFADFQFLPSPSDTPDVAISAPPPPLPSLPERLVPMPLDFYRVLGAEPHFLGDGIRRAYDARVSKPPQYGYSDDALISRRQILQAACETLANSSSRREYNQGLADDEFDTILTQVPWDKVPGALCVLQEAGETELVLQIGESLLKERLPKSFKQDILLSMALAYVDLSRDAMALSPPDFIRGCEVLEMALKLLQEEGASNLAPDLQAQIDETLEE...

XP_057793762.1
MEALTQLSIAPYPRRLLSPPPNRKPHFKPSAAVSGGPTTSRWADRLFADFQFLPSPSDTPDVAISAPPPPLPSLPERLVPMPLDFYRVLGAEPHFLGDGIRRAYDARVSKPPQYGYSDDALISRRQILQAACETLANSSSRREYNQGLADDEFDTILTQVPWDKVPGALCVLQEAGETELVLQIGESLLKERLPKSFKQDILLSMALAYVDLSRDAMALSPPDFIRGCEVLEMALKLLQEEGASNLAPDLQAQIDETLEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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