Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003395`

染色体: Chr02 坐标: 55063768-55072031 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003395`
名称	SmilChr02G003395
描述	uncharacterized SmilChr02G003395
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55063768 - 55072031 / `-`

ID 对照

NCBI Gene ID	`LOC131010315`
GeneID	`131010315`
locus_tag	`-`
NCBI Name	`LOC131010315`
原始查询	`SmilChr02G003395`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824602]; symbol=emb1967; hit=AT3G54350; species=arabidopsis; confidence=medium
产物	Forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824602]; symbol=emb1967; hit=AT3G54350; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G54350` (emb1967) Forkhead-associated (FHA) domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824602] identity=37.7; qcov=0.629; evalue=9.09e-78; confidence=medium
Rice	`Os03g0800800` (OSJNBa0052F07.7) - identity=33.9; qcov=0.526; evalue=5.91e-52; confidence=low
GO	GO:0002151 (G-quadruplex RNA binding); GO:0005515 (protein binding); GO:0031011 (Ino80 complex); GO:0044545 (NSL complex); GO:0045944 (positive regulation of transcription by RNA polymerase II); GO:0071339 (MLL1 complex)
KEGG	-
Pfam	PF00498 (FHA); PF13325 (MCRS_N)
InterPro	-
eggNOG	-
NR	GeneID:131010315

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793757.1`
2	Nucleoplasm	核质	0.40000	`XP_057793758.1`
3	Chromosome	染色体	0.00000	`XP_057793757.1`
4	Centromere	着丝粒	0.00000	`XP_057793757.1`
5	Chromatin	染色质	0.00000	`XP_057793757.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55064053`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B41
`Chr2:55064059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A21,B98
`Chr2:55067060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:55067753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B130,B31,B54,C64,C66
`Chr2:55067846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B5,B64,C27,C34
`Chr2:55067899`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31
`Chr2:55067905`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr2:55067958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:55068125`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr2:55068182`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:55068189`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B50,B55,C23,C86
`Chr2:55068618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793757.1

864 aa

432

864

MCRS_N

FHA

PF13325 MCRS_N 10-65 aa PF00498 FHA 757-827 aa

XP_057793758.1

797 aa

398

797

FHA

PF00498 FHA 690-760 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793757.1`	Pfam	`PF13325`	MCRS_N	Family	10	65	1.2e-14	55.4	N-terminal region of micro-spherule protein
`XP_057793757.1`	Pfam	`PF00498`	FHA	Family	757	827	7.5e-07	30.2	FHA domain
`XP_057793758.1`	Pfam	`PF00498`	FHA	Family	690	760	6.5e-07	30.4	FHA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937774.1
AACTCTTTTTTTCCAATTTACAAGGTTTCTTTGTTCTCCTGCTCCCCGTTGGTCTCCACTGTCCCACCACTCCACACAGACTTTAAAATACAAAGAAATAAACAACAAACTGAAAGCGGCGCAGACACAAACGAGTTGCAGAAGGTGCACAACAATGGGAGCTATGGCTCCGCCTCCTCATTGGATTCCTCAAGACGACGTTTTGCTCAAAAACGCCGTTGAGGCTGGTGCTTCTTTGGAATCTCTAGCTAAAGGTGCTG...

XM_057937775.1
TCTCCTGCTCCCCGTTGGTCTCCACTGTCCCACCACTCCACACAGACTTTAAAATACAAAGAAATAAACAACAAACTGAAAGCGGCGCAGACACAAACGAGTTGCAGAAGGTGCACAACAATGGGAGCTATGGCTCCGCCTCCTCATTGGATTCCTCAAGACGACGTTTTGCTCAAAAACGCCGTTGAGCTAAAGGTGCTGTGCAATTTTCTCGGAGATATACTGTACAGGAGCTGCAAGATCGCTGGGTTTCTCTTCTC...

CDS

2 records

下载 CDS FASTA

LOC131010315
ATGGGAGCTATGGCTCCGCCTCCTCATTGGATTCCTCAAGACGACGTTTTGCTCAAAAACGCCGTTGAGGCTGGTGCTTCTTTGGAATCTCTAGCTAAAGGTGCTGTGCAATTTTCTCGGAGATATACTGTACAGGAGCTGCAAGATCGCTGGGTTTCTCTTCTCTATGATCCTGTTATTTCTGTAGAGGCATCAACCTACATGATTTGGGTTGAACGTTTTGGGGTAACAAATCAATTGAGACCTAATAAGTTCGAAGG...

LOC131010315
ATGATTTGGGTTGAACGTTTTGGGGTAACAAATCAATTGAGACCTAATAAGTTCGAAGGAGTAAAAGATATAGCTTGCAGTTCAGGGAAGAGAAAAGCTGAAAGTGTCCGGAAGTATTATTATGCCATGCGTAAAAGAATCTGTAATGAACCACTGGATATGATGGGTATCAATCTTGCTTCTGGACCTGGTTGTTCTAAATTTAGAGAGGGTAATGAATTCTCATCTGTAGATTGCAAAGTTGGCAATCCATCTTCAAA...

Protein

2 records

下载 Protein FASTA

XP_057793757.1
MGAMAPPPHWIPQDDVLLKNAVEAGASLESLAKGAVQFSRRYTVQELQDRWVSLLYDPVISVEASTYMIWVERFGVTNQLRPNKFEGVKDIACSSGKRKAESVRKYYYAMRKRICNEPLDMMGINLASGPGCSKFREGNEFSSVDCKVGNPSSNILGGQGPDYSITPHPFAEFGPHAAESTGNGLTPSFSGVQNHGQEDLGGENVSNNLPYPYEENISLTGDCSEIPGFGQSKDLPLCNLFETEGLVNQASAVSEFGDQS...

XP_057793758.1
MIWVERFGVTNQLRPNKFEGVKDIACSSGKRKAESVRKYYYAMRKRICNEPLDMMGINLASGPGCSKFREGNEFSSVDCKVGNPSSNILGGQGPDYSITPHPFAEFGPHAAESTGNGLTPSFSGVQNHGQEDLGGENVSNNLPYPYEENISLTGDCSEIPGFGQSKDLPLCNLFETEGLVNQASAVSEFGDQSFPSFGCSPPMPQMPIWHSSEDISATELPIEIVDADLQLGDEFMIPQTANESDALGYGCGPSNLKLET...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器