Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003397`

染色体: Chr02 坐标: 55097340-55103506 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003397`
名称	SmilChr02G003397
描述	coatomer subunit alpha-1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55097340 - 55103506 / `+`

ID 对照

NCBI Gene ID	`LOC131010306`
GeneID	`131010306`
locus_tag	`-`
NCBI Name	`LOC131010306`
原始查询	`SmilChr02G003397`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coatomer subunit alpha-1-like
产物	coatomer subunit alpha-1-like
Arabidopsis	`AT1G62020` (AT1G62020) Coatomer, alpha subunit [Source:NCBI gene (formerly Entrezgene);Acc:842497] identity=82.6; qcov=1; evalue=0; confidence=high
Rice	`Os03g0711400` (OsWD40-84) - identity=77.4; qcov=1; evalue=0; confidence=high
GO	GO:0005198 (structural molecule activity); GO:0005515 (protein binding); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006890 (retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0030126 (COPI vesicle coat)
KEGG	-
Pfam	PF00400 (WD40); PF04053 (B-prop_COPA_B_2nd); PF06957 (COPI_C); PF23953 (TPR_COPA_B)
InterPro	-
eggNOG	-
NR	GeneID:131010306

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057793743.1`
2	Nucleus	细胞核	0.00000	`XP_057793743.1`
3	Chromosome	染色体	0.00000	`XP_057793743.1`
4	Centromere	着丝粒	0.00000	`XP_057793743.1`
5	Chromatin	染色质	0.00000	`XP_057793743.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55099026`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B127
`Chr2:55099026`	`AT`	`A`	1bp_deletion	CDS_variant	1	B127
`Chr2:55099210`	`AC`	`A`	1bp_deletion	frameshift_variant	1	D4
`Chr2:55099210`	`AC`	`A`	1bp_deletion	CDS_variant	1	D4
`Chr2:55099212`	`AT`	`A`	1bp_deletion	frameshift_variant	1	D4
`Chr2:55099212`	`AT`	`A`	1bp_deletion	CDS_variant	1	D4
`Chr2:55099286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B24,B89,C1,C79,C85
`Chr2:55100328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B111,B42,B43
`Chr2:55101025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B49,B60,B79,C34
`Chr2:55101468`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr2:55101615`	`GT`	`G`	1bp_deletion	frameshift_variant	1	B30
`Chr2:55101615`	`GT`	`G`	1bp_deletion	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793743.1

1217 aa

608

1217

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

COPI_C

PF00400 WD40 42-79 aa PF00400 WD40 84-121 aa PF00400 WD40 126-163 aa PF00400 WD40 199-232 aa PF00400 WD40 242-277 aa PF04053 B-prop_COPA_B_2nd 341-585 aa PF23953 TPR_COPA_B 612-768 aa PF06957 COPI_C 816-1217 aa

XP_057793744.1

1217 aa

608

1217

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

COPI_C

XP_057793745.1

1217 aa

608

1217

WD40

B-prop_COPA_B_2nd

TPR_COPA_B

COPI_C

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793743.1`	Pfam	`PF00400`	WD40	Repeat	42	79	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793743.1`	Pfam	`PF00400`	WD40	Repeat	84	121	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793743.1`	Pfam	`PF00400`	WD40	Repeat	126	163	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793743.1`	Pfam	`PF00400`	WD40	Repeat	199	232	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793743.1`	Pfam	`PF00400`	WD40	Repeat	242	277	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793743.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	341	585	5.4e-67	226.6	COPA/B second beta-propeller
`XP_057793743.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	612	768	5.4e-18	66.0	COPA/B TPR domain
`XP_057793743.1`	Pfam	`PF06957`	COPI_C	Repeat	816	1217	6e-167	556.2	Coatomer (COPI) alpha subunit C-terminus
`XP_057793744.1`	Pfam	`PF00400`	WD40	Repeat	42	79	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793744.1`	Pfam	`PF00400`	WD40	Repeat	84	121	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793744.1`	Pfam	`PF00400`	WD40	Repeat	126	163	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793744.1`	Pfam	`PF00400`	WD40	Repeat	199	232	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793744.1`	Pfam	`PF00400`	WD40	Repeat	242	277	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793744.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	341	585	5.4e-67	226.6	COPA/B second beta-propeller
`XP_057793744.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	612	768	5.4e-18	66.0	COPA/B TPR domain
`XP_057793744.1`	Pfam	`PF06957`	COPI_C	Repeat	816	1217	6e-167	556.2	Coatomer (COPI) alpha subunit C-terminus
`XP_057793745.1`	Pfam	`PF00400`	WD40	Repeat	42	79	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793745.1`	Pfam	`PF00400`	WD40	Repeat	84	121	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793745.1`	Pfam	`PF00400`	WD40	Repeat	126	163	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793745.1`	Pfam	`PF00400`	WD40	Repeat	199	232	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793745.1`	Pfam	`PF00400`	WD40	Repeat	242	277	6.1e-49	163.1	WD domain, G-beta repeat
`XP_057793745.1`	Pfam	`PF04053`	B-prop_COPA_B_2nd	Repeat	341	585	5.4e-67	226.6	COPA/B second beta-propeller
`XP_057793745.1`	Pfam	`PF23953`	TPR_COPA_B	Repeat	612	768	5.4e-18	66.0	COPA/B TPR domain
`XP_057793745.1`	Pfam	`PF06957`	COPI_C	Repeat	816	1217	6e-167	556.2	Coatomer (COPI) alpha subunit C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937762.1
GTCATCCCACCAATCAAAATTGAGAAAATTTAGTCATAAGACAAGTAGATGAAAACCGTCATTAAATGAAAAAGAATTTCCACCCCACTATATATAGAAATTAAAATTTCAACTCTCCGATCCAAACACTCCCCCTCTCCAGTAGAGTAGATCCACCAGGTACAGCGACGAAAAGAAATGAAAATTAAGCGCAGTTGAAATTCATATATTCCGCATCACAATTTATACCTGCAATTCATCAAGAGTTCTTCACGGATCTA...

XM_057937760.1
TTCAACTCTCCGATCCAAACACTCCCCCTCTCCAGTAGAGTAGATCCACCAGGTACAGCGACGAAAAGAAATGAAAATTAAGCGCAGTTGAAATTCATATATTCCGCATCACAATTTATACCTGCAATTCATCAAGAGTTCTTCACGGATCTAAATCAGAGACGAAGAATTGTAGGAAATGTTGACGAAGTTCGAGACGAAGAGTAATAGAGTTAAAGGGCTGAGCTTCCACAGCAAGCGGCCATGGATCTTGGCGAGTC...

CDS

3 records

下载 CDS FASTA

LOC131010306
ATGTTGACGAAGTTCGAGACGAAGAGTAATAGAGTTAAAGGGCTGAGCTTCCACAGCAAGCGGCCATGGATCTTGGCGAGTCTGCACAGTGGCGTCATCCAGCTCTGGGATTACCGCATGGGCACTCTCATTGATCGCTTCGACGAGCACGATGGTCCCGTTCGTGGCGTTCATTTCCATAAATCTCAGCCACTGTTCGTTTCTGGAGGTGATGATTACAAAATCAAGGTGTGGAATTACAAATTGCACCGGTGTCTATT...

Protein

3 records

下载 Protein FASTA

XP_057793743.1
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGTLRKKSTVSPADDILRLSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWEVDTLRGHMNNVSCVLFHAR...

XP_057793744.1
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGTLRKKSTVSPADDILRLSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWEVDTLRGHMNNVSCVLFHAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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