Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003415`

染色体: Chr02 坐标: 55397320-55400201 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003415`
名称	SmilChr02G003415
描述	uncharacterized SmilChr02G003415
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55397320 - 55400201 / `+`

ID 对照

NCBI Gene ID	`LOC131010395`
GeneID	`131010395`
locus_tag	`-`
NCBI Name	`LOC131010395`
原始查询	`SmilChr02G003415`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os08g0106900; species=rice; confidence=medium
产物	hit=Os08g0106900; species=rice; confidence=medium
Arabidopsis	`AT5G41980` (AT5G41980) nuclease [Source:NCBI gene (formerly Entrezgene);Acc:834203] identity=33.8; qcov=0.844; evalue=7.37e-64; confidence=low
Rice	`Os08g0106900` - identity=41.5; qcov=0.849; evalue=1.92e-82; confidence=medium
GO	-
KEGG	-
Pfam	PF01609 (DDE_Tnp_1); PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF26138 (DUF8040)
InterPro	-
eggNOG	-
NR	GeneID:131010395

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793876.1`
2	Chromosome	染色体	0.40000	`XP_057793876.1`
3	Telomere	端粒	0.20000	`XP_057793876.1`
4	Centromere	着丝粒	0.00000	`XP_057793876.1`
5	Chromatin	染色质	0.00000	`XP_057793876.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55398763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr2:55398767`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B133
`Chr2:55398768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr2:55398807`	`ATG`	`A`	2bp_deletion	frameshift_variant	5	B120,B139,B62,C18,C44
`Chr2:55398807`	`ATG`	`A`	2bp_deletion	CDS_variant	5	B120,B139,B62,C18,C44
`Chr2:55398842`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B42
`Chr2:55398842`	`GA`	`G`	1bp_deletion	CDS_variant	1	B42
`Chr2:55398880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,B53,C42
`Chr2:55398884`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C46,C63
`Chr2:55398886`	`TGC`	`T`	2bp_deletion	frameshift_variant	26	A19,A24,B106,B133,B134,B15,B16,B17,B29,B33,B38,B40,B56,B59,B6,B64,B67,C1,C24,C25,C34,C38,C40,C51,C54,D1
`Chr2:55398894`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B120,B62,C18,C44,D10
`Chr2:55398920`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C29,C46,C63

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793876.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 72-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 195-341 aa PF04827 Plant_tran 211-345 aa

XP_057793877.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 72-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 195-341 aa PF04827 Plant_tran 211-345 aa

XP_057793878.1

403 aa

202

403

DUF8040

DDE_Tnp_4

DDE_Tnp_1

Plant_tran

PF26138 DUF8040 72-150 aa PF13359 DDE_Tnp_4 182-342 aa PF01609 DDE_Tnp_1 195-341 aa PF04827 Plant_tran 211-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793876.1`	Pfam	`PF26138`	DUF8040	Domain	72	150	7.5e-22	77.7	Domain of unknown function (DUF8040)
`XP_057793876.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	4.7e-22	79.0	DDE superfamily endonuclease
`XP_057793876.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	341	5.6e-09	36.8	Transposase DDE domain
`XP_057793876.1`	Pfam	`PF04827`	Plant_tran	Family	211	345	2.2e-06	28.2	Plant transposon protein
`XP_057793877.1`	Pfam	`PF26138`	DUF8040	Domain	72	150	7.5e-22	77.7	Domain of unknown function (DUF8040)
`XP_057793877.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	4.7e-22	79.0	DDE superfamily endonuclease
`XP_057793877.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	341	5.6e-09	36.8	Transposase DDE domain
`XP_057793877.1`	Pfam	`PF04827`	Plant_tran	Family	211	345	2.2e-06	28.2	Plant transposon protein
`XP_057793878.1`	Pfam	`PF26138`	DUF8040	Domain	72	150	7.5e-22	77.7	Domain of unknown function (DUF8040)
`XP_057793878.1`	Pfam	`PF13359`	DDE_Tnp_4	Domain	182	342	4.7e-22	79.0	DDE superfamily endonuclease
`XP_057793878.1`	Pfam	`PF01609`	DDE_Tnp_1	Domain	195	341	5.6e-09	36.8	Transposase DDE domain
`XP_057793878.1`	Pfam	`PF04827`	Plant_tran	Family	211	345	2.2e-06	28.2	Plant transposon protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937893.1
TTAGGGTGGATAAATTGTATTTCTAATGTTTGATGAGGTATATTATTAATAAGTGAAACCCGCAATAAACTGGCGACCCGGCCTAATATCACTGTAGAGAAGACATAATTGATCCAGCCCCCTTGGTGAGATTCTTAATATCGATATTACTATGTCTGAGATTATAATTCAAGAAGTCCAAATTGTCCCTTGCTTCATTTCAGATTCAACCCTCCTGTCCTAGGGTTCTTCCCTAAAAGCTCGCAGGTAAGAGGGTGAGA...

XM_057937894.1
TTAGGGTGGATAAATTGTATTTCTAATGTTTGATGAGGTATATTATTAATAAGTGAAACCCGCAATAAACTGGCGACCCGGCCTAATATCACTGTAGAGAAGACATAATTGATCCAGCCCCCTTGGTGAGATTCTTAATATCGATATTACTATGTCTGAGATTATAATTCAAGAAGTCCAAATTGTCCCTTGCTTCATTTCAGATTCAACCCTCCTGTCCTAGGGTTCTTCCCTAAAAGCTCGCAGGTAAGAGGGTGAGA...

CDS

3 records

下载 CDS FASTA

LOC131010395
ATGCCGACTAACGACGTTACCACAGTATGCATTTACTTGTTGATGGAAGAAATTTTCCTTCAACACTTAATTCTCATGGTTGTTGCTTATCGTGTCATGCTTAAGATGAGATCCCGTAAACGAAAAAGAGCTTGTAATGCAACAGCTTTTGGGATGATAGAACGCATTCCCGATCAGATTACTCACATGAATAGGCTTGTAGGTGTTAGTGATTTTGATTGCCTAGCAAACTTGCGAATGGATCGCAATACATTTGGTAG...

Protein

3 records

下载 Protein FASTA

XP_057793876.1
MPTNDVTTVCIYLLMEEIFLQHLILMVVAYRVMLKMRSRKRKRACNATAFGMIERIPDQITHMNRLVGVSDFDCLANLRMDRNTFGRLCILLRDMGGLTNGRYIEVEEQVAMFLSVLAHHKKNRVVKFDFWRSGQTVSKFVHLVLKAILKLHTILLVKPAPVPDDSTDNRWCWFKGCLGALDGSYINLMVSNVDKPRYRTRKGQIATNTLAVCDRNMQFVYVLPGWEGSAADSRILRDALQRANGFRVPKGNYYLCDNGY...

XP_057793877.1
MPTNDVTTVCIYLLMEEIFLQHLILMVVAYRVMLKMRSRKRKRACNATAFGMIERIPDQITHMNRLVGVSDFDCLANLRMDRNTFGRLCILLRDMGGLTNGRYIEVEEQVAMFLSVLAHHKKNRVVKFDFWRSGQTVSKFVHLVLKAILKLHTILLVKPAPVPDDSTDNRWCWFKGCLGALDGSYINLMVSNVDKPRYRTRKGQIATNTLAVCDRNMQFVYVLPGWEGSAADSRILRDALQRANGFRVPKGNYYLCDNGY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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