当前解析结果
SmilChr02G003416| 统一新 Gene ID | SmilChr02G003416 |
|---|---|
| 名称 | SmilChr02G003416 |
| 描述 | uncharacterized SmilChr02G003416 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55401097 - 55402998 / - |
| NCBI Gene ID | LOC131009758 |
|---|---|
| GeneID | 131009758 |
| locus_tag | - |
| NCBI Name | LOC131009758 |
| 原始查询 | SmilChr02G003416 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os02g0328500; species=rice; confidence=medium |
| 产物 | hit=Os02g0328500; species=rice; confidence=medium |
| Arabidopsis | AT5G27260 (AT5G27260)Myb/SANT-like DNA-binding domain protein [Source:NCBI gene (formerly Entrezgene);Acc:832784] identity=24.2; qcov=0.898; evalue=2.14e-07; confidence=weak |
| Rice | Os02g0328500- identity=35.3; qcov=0.651; evalue=1.72e-27; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009758 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793150.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057793150.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057793150.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057793150.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057793150.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55401126 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:55401177 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:55401201 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:55401204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B112,B57,B87 |
Chr2:55401276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,D11 |
Chr2:55401289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:55401290 |
C |
CT |
1bp_insertion | frameshift_variant | 32 | A13,A5,B107,B110,B123,B133,B136,B137,B19,B3,B41,B5,B53,B60,B72,B86,B98,C13,C18,C21,C25,C29,C37,C42,C44,C46,C48,C53,C63,C70,C9,D10 |
Chr2:55401305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B94,D11 |
Chr2:55401309 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,D11 |
Chr2:55401346 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A20 |
Chr2:55401350 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,D11 |
Chr2:55401386 |
C |
CT |
1bp_insertion | frameshift_variant | 10 | A11,A7,B34,B38,B39,B95,C11,C12,C13,C69 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。