当前解析结果
SmilChr02G003425| 统一新 Gene ID | SmilChr02G003425 |
|---|---|
| 名称 | SmilChr02G003425 |
| 描述 | glucan endo-1,3-beta-glucosidase, acidic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55455898 - 55457804 / + |
| NCBI Gene ID | LOC131010402 |
|---|---|
| GeneID | 131010402 |
| locus_tag | - |
| NCBI Name | LOC131010402 |
| 原始查询 | SmilChr02G003425 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glucan endo-1,3-beta-glucosidase, acidic-like |
| 产物 | glucan endo-1%2C3-beta-glucosidase%2C acidic-like |
| Arabidopsis | AT3G57270 (BG1)beta-1,3-glucanase 1 [Source:NCBI gene (formerly Entrezgene);Acc:824894] identity=57.3; qcov=1; evalue=7.94e-133; confidence=high |
| Rice | Os01g0940700 (OsPR2)- identity=51.9; qcov=1; evalue=2.1e-108; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005886 (plasma membrane); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF00332 (Glyco_hydro_17) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010402 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057793886.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793886.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793886.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793886.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793886.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55456131 |
G |
GC |
1bp_insertion | frameshift_variant | 2 | C26,C87 |
Chr2:55456131 |
G |
GC |
1bp_insertion | CDS_variant | 2 | C26,C87 |
Chr2:55456788 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:55456800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr2:55456859 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:55456887 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | D1 |
Chr2:55456887 |
GA |
G |
1bp_deletion | CDS_variant | 1 | D1 |
Chr2:55456908 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B65,D9 |
Chr2:55457127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr2:55457563 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B24 |
Chr2:55457563 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B24 |
Chr2:55457595 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B37,B75,C40,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793886.1PF00332
Glyco_hydro_17 28-340 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793886.1 |
Pfam | PF00332 |
Glyco_hydro_17 | Domain | 28 | 340 | 2.6e-109 | 366.3 | Glycosyl hydrolases family 17 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。