当前解析结果
SmilChr02G003430| 统一新 Gene ID | SmilChr02G003430 |
|---|---|
| 名称 | SmilChr02G003430 |
| 描述 | wall-associated receptor kinase-like 14 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55524233 - 55529275 / + |
| NCBI Gene ID | LOC131010406 |
|---|---|
| GeneID | 131010406 |
| locus_tag | - |
| NCBI Name | LOC131010406 |
| 原始查询 | SmilChr02G003430 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 14 |
| 产物 | wall-associated receptor kinase-like 14 |
| Arabidopsis | AT2G23450 (AT2G23450)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816877] identity=49.4; qcov=1.04; evalue=0; confidence=high |
| Rice | Os03g0225700 (WAK25)- identity=52.6; qcov=0.912; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010406 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793891.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793891.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793891.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793891.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793891.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55524717 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:55524741 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:55525044 |
GGC |
G |
2bp_deletion | frameshift_variant | 9 | B114,B129,B23,B54,B65,B69,B75,C12,D8 |
Chr2:55525073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B20,C77 |
Chr2:55525111 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B20,B67,C46,C77 |
Chr2:55525162 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr2:55525233 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:55527748 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:55528439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:55528505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B45,C3 |
Chr2:55528667 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:55528887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,C39,C65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793891.1PF00069
Pkinase 326-592 aa
PF07714
PK_Tyr_Ser-Thr 329-592 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793891.1 |
Pfam | PF00069 |
Pkinase | Domain | 326 | 592 | 3.9e-44 | 151.7 | Protein kinase domain |
XP_057793891.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 329 | 592 | 3.9e-43 | 148.3 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。