当前解析结果
SmilChr02G003431| 统一新 Gene ID | SmilChr02G003431 |
|---|---|
| 名称 | SmilChr02G003431 |
| 描述 | elongation of fatty acids protein 3-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55544934 - 55546082 / - |
| NCBI Gene ID | LOC131010408 |
|---|---|
| GeneID | 131010408 |
| locus_tag | - |
| NCBI Name | LOC131010408 |
| 原始查询 | SmilChr02G003431 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | elongation of fatty acids protein 3-like |
| 产物 | elongation of fatty acids protein 3-like |
| Arabidopsis | AT4G36830 (HOS3-1)GNS1/SUR4 membrane protein family [Source:NCBI gene (formerly Entrezgene);Acc:829836] identity=58.7; qcov=0.964; evalue=5.02e-104; confidence=high |
| Rice | Os12g0635700- identity=48.3; qcov=0.95; evalue=1e-63; confidence=high |
| GO | GO:0005789 (endoplasmic reticulum membrane); GO:0009922 (fatty acid elongase activity); GO:0019367 (fatty acid elongation, saturated fatty acid); GO:0030148 (sphingolipid biosynthetic process); GO:0034625 (fatty acid elongation, monounsaturated fatty acid); GO:0034626 (fatty acid elongation, polyunsaturated fatty acid); GO:0042761 (very long-chain fatty acid biosynthetic process) |
| KEGG | - |
| Pfam | PF01151 (ELO) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010408 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057793893.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057793893.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793893.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793893.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793893.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55545139 |
ATC |
A |
2bp_deletion | frameshift_variant | 2 | A19,B139 |
Chr2:55545139 |
ATC |
A |
2bp_deletion | CDS_variant | 2 | A19,B139 |
Chr2:55545265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:55545382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:55545503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr2:55545606 |
G |
GGC |
2bp_insertion | frameshift_variant | 1 | C53 |
Chr2:55545606 |
G |
GGC |
2bp_insertion | CDS_variant | 1 | C53 |
Chr2:55545620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B45,C3 |
Chr2:55545747 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:55545844 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793893.1PF01151
ELO 31-268 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793893.1 |
Pfam | PF01151 |
ELO | Family | 31 | 268 | 1.3e-29 | 104.2 | GNS1/SUR4 family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。