当前解析结果
SmilChr02G003437| 统一新 Gene ID | SmilChr02G003437 |
|---|---|
| 名称 | SmilChr02G003437 |
| 描述 | BEL1-like homeodomain protein 4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55605002 - 55613731 / + |
| NCBI Gene ID | LOC131010411 |
|---|---|
| GeneID | 131010411 |
| locus_tag | - |
| NCBI Name | LOC131010411 |
| 原始查询 | SmilChr02G003437 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | BEL1-like homeodomain protein 4 |
| 产物 | BEL1-like homeodomain protein 4 |
| Arabidopsis | AT4G36870 (BLH2)BEL1-like homeodomain 2 [Source:NCBI gene (formerly Entrezgene);Acc:829840] identity=63.9; qcov=0.521; evalue=1.09e-107; confidence=medium |
| Rice | Os03g0732100- identity=59.9; qcov=0.525; evalue=2.69e-97; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II) |
| KEGG | - |
| Pfam | PF00046 (Homeodomain); PF05920 (Homeobox_KN); PF07526 (POX) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010411 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793904.1 |
| 2 | Nucleoplasm | 核质 | 0.20000 | XP_057793904.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793904.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793904.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793904.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55606089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B108,B50,C23 |
Chr2:55606094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B110,B88,C51 |
Chr2:55606245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C56 |
Chr2:55606397 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr2:55607357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B53,B68,C45 |
Chr2:55607433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:55607523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:55607534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:55607642 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B28,B40,C16,C61 |
Chr2:55611363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:55611416 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,B48,B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793904.1PF07526
POX 168-293 aa
PF05920
Homeobox_KN 362-401 aa
PF00046
Homeodomain 369-401 aa
XP_057793905.1PF07526
POX 168-293 aa
PF05920
Homeobox_KN 362-401 aa
PF00046
Homeodomain 369-401 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793904.1 |
Pfam | PF07526 |
POX | Domain | 168 | 293 | 3.9e-38 | 131.7 | Associated with HOX |
XP_057793904.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 362 | 401 | 4.4e-19 | 68.8 | Homeobox KN domain |
XP_057793904.1 |
Pfam | PF00046 |
Homeodomain | Domain | 369 | 401 | 6.4e-08 | 33.0 | Homeodomain |
XP_057793905.1 |
Pfam | PF07526 |
POX | Domain | 168 | 293 | 3.9e-38 | 131.7 | Associated with HOX |
XP_057793905.1 |
Pfam | PF05920 |
Homeobox_KN | Family | 362 | 401 | 4.4e-19 | 68.8 | Homeobox KN domain |
XP_057793905.1 |
Pfam | PF00046 |
Homeodomain | Domain | 369 | 401 | 6.4e-08 | 33.0 | Homeodomain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。