Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003439`

染色体: Chr02 坐标: 55663547-55668086 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003439`
名称	SmilChr02G003439
描述	F-box/FBD/LRR-repeat protein At1g13570-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55663547 - 55668086 / `+`

ID 对照

NCBI Gene ID	`LOC131010413`
GeneID	`131010413`
locus_tag	`-`
NCBI Name	`LOC131010413`
原始查询	`SmilChr02G003439`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/FBD/LRR-repeat protein At1g13570-like
产物	F-box/FBD/LRR-repeat protein At1g13570-like
Arabidopsis	`AT1G13570` (AT1G13570) F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837918] identity=40.6; qcov=0.965; evalue=2.07e-95; confidence=medium
Rice	`Os07g0459500` - identity=32.8; qcov=0.718; evalue=2.24e-45; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:131010413

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793907.1`
2	Cytoplasm	细胞质	0.20000	`XP_057793907.1`
3	Cytosol	细胞质基质	0.20000	`XP_057793907.1`
4	Chromosome	染色体	0.00000	`XP_057793907.1`
5	Centromere	着丝粒	0.00000	`XP_057793907.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55665702`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr2:55666093`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr2:55667492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,A6,B108,B50,C23
`Chr2:55667563`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793907.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-58 aa PF23622 LRR_At1g61320_AtMIF1 105-215 aa PF24758 LRR_At5g56370 115-335 aa

XP_057793908.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-58 aa PF23622 LRR_At1g61320_AtMIF1 105-215 aa PF24758 LRR_At5g56370 115-335 aa

XP_057793909.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-58 aa PF23622 LRR_At1g61320_AtMIF1 105-215 aa PF24758 LRR_At5g56370 115-335 aa

XP_057793910.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-58 aa PF23622 LRR_At1g61320_AtMIF1 105-215 aa PF24758 LRR_At5g56370 115-335 aa

XP_057793911.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-58 aa PF23622 LRR_At1g61320_AtMIF1 105-215 aa PF24758 LRR_At5g56370 115-335 aa

XP_057793912.1

429 aa

214

429

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-58 aa PF23622 LRR_At1g61320_AtMIF1 105-215 aa PF24758 LRR_At5g56370 115-335 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793907.1`	Pfam	`PF00646`	F-box	Domain	23	58	5.3e-07	30.0	F-box domain
`XP_057793907.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	105	215	5.6e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057793907.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	115	335	3.1e-21	76.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793908.1`	Pfam	`PF00646`	F-box	Domain	23	58	5.3e-07	30.0	F-box domain
`XP_057793908.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	105	215	5.6e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057793908.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	115	335	3.1e-21	76.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793909.1`	Pfam	`PF00646`	F-box	Domain	23	58	5.3e-07	30.0	F-box domain
`XP_057793909.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	105	215	5.6e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057793909.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	115	335	3.1e-21	76.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793910.1`	Pfam	`PF00646`	F-box	Domain	23	58	5.3e-07	30.0	F-box domain
`XP_057793910.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	105	215	5.6e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057793910.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	115	335	3.1e-21	76.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793911.1`	Pfam	`PF00646`	F-box	Domain	23	58	5.3e-07	30.0	F-box domain
`XP_057793911.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	105	215	5.6e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057793911.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	115	335	3.1e-21	76.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057793912.1`	Pfam	`PF00646`	F-box	Domain	23	58	5.3e-07	30.0	F-box domain
`XP_057793912.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	105	215	5.6e-13	49.7	At1g61320/AtMIF1, LRR domain
`XP_057793912.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	115	335	3.1e-21	76.8	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057937929.1
TATCAATCAAAAAAGGATAAAAGAGTTGAGATCGACGGAAGAAAATTAACAGAGCTTTGGTTGTGAAACTATGAAAATTGAATTTGTGCGAGAAGTTGAATGATTGCTTGTCTCCCACTGCTTCACCGCCATCAATTTCAACCAGTTTGTTCTAGTATGACCATCACAATCATCCTGCTGGAGTTTTAGTCTTCATTGGACTAAGCACCGAACACTTATTATTGTTCTTCATGAGTAATATGAAGCAAAGAGAACCTCAT...

XM_057937927.1
GGCTGCTGCTTCGTTTCTGGCATTTAGGATAGCTTCAAGCTTTTCCAGCGTGCACGAGCACTCCGGCGCCGACCTCCAATCGTCAATCACGCAGCTTCATTCTTTCGACTGTAATTTAGTTTGAGGCTATGAAATATAGGGTATGACCATCACAATCATCCTGCTGGAGTTTTAGTCTTCATTGGACTAAGCACCGAACACTTATTATTGTTCTTCATGAGTAATATGAAGCAAAGAGAACCTCATGAAGTTCCTTGCAG...

CDS

6 records

下载 CDS FASTA

LOC131010413
ATGAGTAATATGAAGCAAAGAGAACCTCATGAAGTTCCTTGCAGTTTAAAAATAGAGTTTGACACAATAAGCAACTTACCAGGGCACATTGTTGACAAAATCCTGTCACATTTATCTCTGAGGGATGCCGTTCGAACAAGTATTTTGTCGAGCAAGTGGAGATACAGATGGGTTACCCTCCCTTATCTTGTTTTTGATAATCAATCGGTTTTAGTCTCTACCCAAGATCAAACACTTATAAAGAACAAACTAGTGAGTAT...

Protein

6 records

下载 Protein FASTA

XP_057793907.1
MSNMKQREPHEVPCSLKIEFDTISNLPGHIVDKILSHLSLRDAVRTSILSSKWRYRWVTLPYLVFDNQSVLVSTQDQTLIKNKLVSIVDHVLLLHTGPIHKFKFSHRDLQGVSDIDRWILYLSRGSVKEFILEIWKGHRYKLPSSIYSCQKLIHLELFNCLLKPPPHFNGFKNLKSLDLQHITMDQLAFEYMISSCPLLERLTLMNFDGFTLLNIHAPNLLFFDVGGVFEDVSFHDTFHLAVVSIGLYVNSGIERNLAFG...

XP_057793908.1
MSNMKQREPHEVPCSLKIEFDTISNLPGHIVDKILSHLSLRDAVRTSILSSKWRYRWVTLPYLVFDNQSVLVSTQDQTLIKNKLVSIVDHVLLLHTGPIHKFKFSHRDLQGVSDIDRWILYLSRGSVKEFILEIWKGHRYKLPSSIYSCQKLIHLELFNCLLKPPPHFNGFKNLKSLDLQHITMDQLAFEYMISSCPLLERLTLMNFDGFTLLNIHAPNLLFFDVGGVFEDVSFHDTFHLAVVSIGLYVNSGIERNLAFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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