当前解析结果
SmilChr02G003447| 统一新 Gene ID | SmilChr02G003447 |
|---|---|
| 名称 | SmilChr02G003447 |
| 描述 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55721558 - 55722746 / + |
| NCBI Gene ID | LOC131010422 |
|---|---|
| GeneID | 131010422 |
| locus_tag | - |
| NCBI Name | LOC131010422 |
| 原始查询 | SmilChr02G003447 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At2g15690, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At2g15690%2C mitochondrial-like |
| Arabidopsis | AT2G15690 (AT2G15690)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816062] identity=35.1; qcov=0.968; evalue=1.47e-68; confidence=medium |
| Rice | Os01g0737900- identity=33.8; qcov=1.03; evalue=1.84e-63; confidence=low |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3); PF14432 (DYW_deaminase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010422 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057793919.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057793919.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793919.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793919.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793919.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55721598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:55721657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:55721723 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr2:55722185 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:55722224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr2:55722232 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:55722260 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:55722342 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr2:55722428 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B61,C30 |
Chr2:55722459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B66 |
Chr2:55722515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr2:55722541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793919.1PF01535
PPR 101-130 aa
PF13812
PPR_3 129-177 aa
PF01535
PPR 132-157 aa
PF14432
DYW_deaminase 282-374 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793919.1 |
Pfam | PF01535 |
PPR | Repeat | 101 | 130 | 4.3e-10 | 39.9 | PPR repeat |
XP_057793919.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 129 | 177 | 2.3e-08 | 34.7 | Pentatricopeptide repeat domain |
XP_057793919.1 |
Pfam | PF01535 |
PPR | Repeat | 132 | 157 | 4.3e-10 | 39.9 | PPR repeat |
XP_057793919.1 |
Pfam | PF14432 |
DYW_deaminase | Domain | 282 | 374 | 3.9e-41 | 139.5 | DYW family of nucleic acid deaminases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。