当前解析结果
SmilChr02G003454| 统一新 Gene ID | SmilChr02G003454 |
|---|---|
| 名称 | SmilChr02G003454 |
| 描述 | calcium uniporter protein 4, mitochondrial |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 55824796 - 55826600 / + |
| NCBI Gene ID | LOC131010430 |
|---|---|
| GeneID | 131010430 |
| locus_tag | - |
| NCBI Name | LOC131010430 |
| 原始查询 | SmilChr02G003454 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | calcium uniporter protein 4, mitochondrial |
| 产物 | calcium uniporter protein 4%2C mitochondrial |
| Arabidopsis | AT5G42610 (AT5G42610)calcium uniporter (DUF607) [Source:NCBI gene (formerly Entrezgene);Acc:834268] identity=47.1; qcov=0.966; evalue=2.99e-96; confidence=high |
| Rice | Os10g0501500- identity=54.5; qcov=0.651; evalue=1.01e-71; confidence=high |
| GO | GO:0005262 (calcium channel activity); GO:0005743 (mitochondrial inner membrane); GO:0015292 (uniporter activity); GO:0036444 (calcium import into the mitochondrion); GO:0051560 (mitochondrial calcium ion homeostasis); GO:1990246 (uniplex complex) |
| KEGG | - |
| Pfam | PF04678 (MCU) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010430 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057793925.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057793925.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 1.00000 | XP_057793925.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793925.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793925.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:55824946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr2:55824952 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr2:55825286 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B49 |
Chr2:55825286 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B49 |
Chr2:55826001 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B28,B99,C75,D1 |
Chr2:55826043 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:55826079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B73,B87,C46,C50 |
Chr2:55826095 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B84 |
Chr2:55826095 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:55826175 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:55826207 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | A3,B24,B33,C48 |
Chr2:55826207 |
TG |
T |
1bp_deletion | CDS_variant | 4 | A3,B24,B33,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793925.1PF04678
MCU 148-306 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793925.1 |
Pfam | PF04678 |
MCU | Family | 148 | 306 | 2.4e-50 | 171.8 | Mitochondrial calcium uniporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。