Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003463`

染色体: Chr02 坐标: 55922598-55931701 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003463`
名称	SmilChr02G003463
描述	uncharacterized SmilChr02G003463
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55922598 - 55931701 / `+`

ID 对照

NCBI Gene ID	`LOC131010438`
GeneID	`131010438`
locus_tag	`-`
NCBI Name	`LOC131010438`
原始查询	`SmilChr02G003463`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0595000; species=rice; confidence=high
产物	hit=Os12g0595000; species=rice; confidence=high
Arabidopsis	`AT5G35730` (AT5G35730) EXS (ERD1/XPR1/SYG1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:833549] identity=76.9; qcov=0.957; evalue=0; confidence=high
Rice	`Os12g0595000` - identity=76.4; qcov=0.969; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0016020 (membrane)
KEGG	-
Pfam	PF03124 (EXS)
InterPro	-
eggNOG	-
NR	GeneID:131010438

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057793938.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057793941.1`
3	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057793942.1`
4	Vacuole membrane	液泡膜	0.20000	`XP_057793941.1`
5	Nucleus	细胞核	0.00000	`XP_057793938.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55923271`	`A`	`AT`	1bp_insertion	frameshift_variant	1	C24
`Chr2:55923271`	`A`	`AT`	1bp_insertion	CDS_variant	1	C24
`Chr2:55924861`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	D7
`Chr2:55924861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:55925525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr2:55925529`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,C8,C85
`Chr2:55928972`	`GA`	`G`	1bp_deletion	frameshift_variant	1	B135
`Chr2:55928972`	`GA`	`G`	1bp_deletion	CDS_variant	1	B135

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793938.1

474 aa

237

474

EXS

PF03124 EXS 107-441 aa

XP_057793940.1

474 aa

237

474

EXS

PF03124 EXS 107-441 aa

XP_057793941.1

461 aa

230

461

EXS

PF03124 EXS 94-428 aa

XP_057793942.1

416 aa

208

416

EXS

PF03124 EXS 49-383 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793938.1`	Pfam	`PF03124`	EXS	Family	107	441	1.5e-91	307.9	EXS family
`XP_057793940.1`	Pfam	`PF03124`	EXS	Family	107	441	1.5e-91	307.9	EXS family
`XP_057793941.1`	Pfam	`PF03124`	EXS	Family	94	428	1.1e-91	308.3	EXS family
`XP_057793942.1`	Pfam	`PF03124`	EXS	Family	49	383	9.5e-92	308.5	EXS family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057937958.1
TTGCAGCACTGGCATTTCAAACTGGGAAAATATAAAAGAATAAACCATAAATCAAAGGAAACGATCCACCGGAATTTCCTTAAAACGCACCCTAACAAATTCACTTTCCTTCAACTTCACACAACAGATTTTCCGCAATGAATTGCACTGGATCTCGCCTTCTTCAAACACTCCTTTTCTGTTTCCGGCAGAAATCCCAACACTGCAAACTACAATCGGATTCTGCGTTCCTTTTGTATTCTGCAGTTTTACTTTTAGGG...

XM_057937955.1
TGCAGCACTGGCATTTCAAACTGGGAAAATATAAAAGAATAAACCATAAATCAAAGGAAACGATCCACCGGAATTTCCTTAAAACGCACCCTAACAAATTCACTTTCCTTCAACTTCACACAACAGATTTTCCGCAATGAATTGCACTGGATCTCGCCTTCTTCAAACACTCCTTTTCTGTTTCCGGCAGAAATCCCAACACTGCAAACTACAATCGGATTCTGCGTTCCTTTTGTATTCTGCAGTTTTACTTTTAGGGC...

CDS

4 records

下载 CDS FASTA

LOC131010438
ATGTTTGGAGGTCTTGAGTATACCCCTAACAAGAGTCCTCATCTACGCAAATCCGGTAGCCGACCTGTTGTGTTTGATATTGATTCGAGTGAGCTGGGAAACAGCTCTGAGGAAGATCTTTTACTTTCTAAAGAGTCAAATGAAATGAAGGGTGGGACAACAGCATTAAGCAGTATGGCAAATGTGCCTTCCCCTCTTCTGCTGTGGAGATTTAAGGTACTACTGTTTTTCGTGTGGGGACTCTGTTGTTTCAAGATTGA...

Protein

4 records

下载 Protein FASTA

XP_057793938.1
MFGGLEYTPNKSPHLRKSGSRPVVFDIDSSELGNSSEEDLLLSKESNEMKGGTTALSSMANVPSPLLLWRFKVLLFFVWGLCCFKIEWDSVMRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWGINLWVFAQSNIGYGKIFDLDQSHLTHREIWKCATWMTIIVPTSMTAYLYLYSHGEVPLAASQPVLLYAAVVMTLIFPFDIFCLSSRFFFLRTVWRIVFPLQAITFADFFLADIFTSMSKVFSDLERSVCRMVHRQV...

XP_057793940.1
MFGGLEYTPNKSPHLRKSGSRPVVFDIDSSELGNSSEEDLLLSKESNEMKGGTTALSSMANVPSPLLLWRFKVLLFFVWGLCCFKIEWDSVMRMSADLRDLFLYEAFLYYNPLLLVTMMVWLWGINLWVFAQSNIGYGKIFDLDQSHLTHREIWKCATWMTIIVPTSMTAYLYLYSHGEVPLAASQPVLLYAAVVMTLIFPFDIFCLSSRFFFLRTVWRIVFPLQAITFADFFLADIFTSMSKVFSDLERSVCRMVHRQV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器