Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003464`

染色体: Chr02 坐标: 55932406-55936660 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003464`
名称	SmilChr02G003464
描述	J domain-containing protein required for chloroplast accumulation response 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55932406 - 55936660 / `+`

ID 对照

NCBI Gene ID	`LOC131010439`
GeneID	`131010439`
locus_tag	`-`
NCBI Name	`LOC131010439`
原始查询	`SmilChr02G003464`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	J domain-containing protein required for chloroplast accumulation response 1
产物	J domain-containing protein required for chloroplast accumulation response 1
Arabidopsis	`AT4G36520` (AT4G36520) Chaperone DnaJ-domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829804] identity=59.1; qcov=0.186; evalue=4.53e-35; confidence=weak
Rice	`Os03g0198300` (OsDjC25) - identity=72.5; qcov=0.204; evalue=7.7e-44; confidence=weak
GO	GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131010439

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus membrane	核膜	0.40000	`XP_057793943.1`
2	Cytoplasm	细胞质	0.40000	`XP_057793944.1`
3	Cytosol	细胞质基质	0.20000	`XP_057793943.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057793944.1`
5	Golgi apparatus	高尔基体	0.20000	`XP_057793943.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55933027`	`TGA`	`T`	2bp_deletion	frameshift_variant	2	A3,C82
`Chr2:55933027`	`TGA`	`T`	2bp_deletion	CDS_variant	2	A3,C82
`Chr2:55933088`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr2:55933150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:55933982`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,D10
`Chr2:55934170`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:55934397`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C79
`Chr2:55934552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,C2,C32,C37,C68
`Chr2:55934580`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B23,B37,D3
`Chr2:55934633`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,C2,C32,C37,C68
`Chr2:55934635`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:55934681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B17,D10

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937960.1
TGTTATTTCACCTTTGTCACCCACTGCCACTGGTCCTCATCCTTCAACCAATTAAAAAACATCACAAATCCCCCTAGTAATTTTGTGTCACACAATATTATAAATCAACAAGCGCCAGGAGAAATTATTCCAAGCATGAGTCTTGAAATTATTAATTTTCTGGCATTTTGCCAAAACAAATTTGTCGTCTGCCATTCTCTTCTTATCTTCATTTTCCATTCAAAGCAAGCCGTCTTCATACCCAAATCTGTGGCCTCAGT...

XM_057937961.1
GCATGAGTCTTGAAATTATTAATTTTCTGGCATTTTGCCAAAACAAATTTGTCGTCTGCCATTCTCTTCTTATCTTCATTTTCCATTCAAAGCAAGCCGTCTTCATACCCAAATCTGTGGCCTCAGTTTCTCAACAAACATTCTCTCCATCGTCACTCTAAAACCTCATTGCATCTTCCTCTCTTTCTCTCTCCATGCACAAGGTTAATTGAATGTGTTTGACTGAAATCTGTTATCTTCTTCGCATGCTGATTCAACCT...

CDS

2 records

下载 CDS FASTA

LOC131010439
ATGGAGAAGTTGACGCGGAGAGAGAATGGCGGCTCCCCGAAGACGCCAGAGTCAGACGACATGGACTTCAAGGACGTGTTCGGGGGTCCCCCTCGGCGGTTCTCGATGCAGGATGTGAGAGAGAGGCACAGTTTCGGGGAGTCGTCTTCGGCCTCGTCGCCGTGGGAGAAGCCCGTCTTCGGAGAGGAGAAGAGGCGGCAGAGGGGCCCCGATTTCTTCGACGACATATTCAAAGGCTCGCCGAGGAGGAGCGATCGCGA...

LOC131010439
ATGGATTTGCCGACGTTTGGATCCCAGAATCATGGGCAGCAGCACAAGGTGGATGGATTGAGTATCCCACAGTCTTGGAGTCCTTTCTCTAGATTTTCAAATGAGGCAAGTGGGAGGCTTGATGAAGTTGAGCCCGTGAGTCACCAAAGGCCGTTGTCCGATGAAGCTGAAGATTCACCAATCTCTGATCAGAAAGACAAGGATGTGAGCATTGGCAATGATCAGTTTCATTTCTCAATCTACAAATGGGAAGGAGGCAG...

Protein

2 records

下载 Protein FASTA

XP_057793943.1
MEKLTRRENGGSPKTPESDDMDFKDVFGGPPRRFSMQDVRERHSFGESSSASSPWEKPVFGEEKRRQRGPDFFDDIFKGSPRRSDRDGSNPGSRIMSPFSPKPDALGSSLPAHFSLPAKWTKSMDLPTFGSQNHGQQHKVDGLSIPQSWSPFSRFSNEASGRLDEVEPVSHQRPLSDEAEDSPISDQKDKDVSIGNDQFHFSIYKWEGGRGVPMLMPLVIGNNLKSKDGIKYDEMSAKPESLRSELAEGDVRSRRDKKQE...

XP_057793944.1
MDLPTFGSQNHGQQHKVDGLSIPQSWSPFSRFSNEASGRLDEVEPVSHQRPLSDEAEDSPISDQKDKDVSIGNDQFHFSIYKWEGGRGVPMLMPLVIGNNLKSKDGIKYDEMSAKPESLRSELAEGDVRSRRDKKQELDYVFEAFHESSESKSKISLNDSVVLDTSVKEEQVKSVDGSSVRDKVEKKVHVKISEGLDAFLDRSDQPEMKDKKARAQPVDGDSKKMKERGRKVMESNNAKVEKSTKLEAASEVKSGAAKGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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