Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003466`

染色体: Chr02 坐标: 55959130-55961909 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003466`
名称	SmilChr02G003466
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	55959130 - 55961909 / `+`

ID 对照

NCBI Gene ID	`LOC131010441`
GeneID	`131010441`
locus_tag	`-`
NCBI Name	`LOC131010441`
原始查询	`SmilChr02G003466`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
产物	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Arabidopsis	`AT3G50700` (IDD2) indeterminate(ID)-domain 2 [Source:NCBI gene (formerly Entrezgene);Acc:824234] identity=52.3; qcov=0.998; evalue=1.84e-127; confidence=high
Rice	`Os01g0242200` (OsIDD8) - identity=59.2; qcov=0.726; evalue=1.53e-107; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus)
KEGG	-
Pfam	PF12874 (zf-met); PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD)
InterPro	-
eggNOG	-
NR	GeneID:131010441

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793946.1`
2	Chromosome	染色体	0.00000	`XP_057793946.1`
3	Centromere	着丝粒	0.00000	`XP_057793946.1`
4	Chromatin	染色质	0.00000	`XP_057793946.1`
5	Telomere	端粒	0.00000	`XP_057793946.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:55959713`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,C2,C32,C68,D4
`Chr2:55959889`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C87,D2
`Chr2:55959943`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:55960160`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C22,C55,C86
`Chr2:55960208`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B59,C71
`Chr2:55960450`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B10
`Chr2:55960450`	`CA`	`C`	1bp_deletion	CDS_variant	1	B10
`Chr2:55960485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,C2,C32,C68,D4
`Chr2:55961126`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:55961131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A21,A5
`Chr2:55961153`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B2,B7,C55
`Chr2:55961352`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793946.1

409 aa

204

409

zf-met

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF12874 zf-met 59-81 aa PF22996 C2H2-2nd_BIRD-IDD 96-130 aa PF22995 C2CH-3rd_BIRD-IDD 134-158 aa PF22992 C2CH-4th_BIRD-IDD 161-197 aa

XP_057793947.1

412 aa

206

412

zf-met

C2H2-2nd_BIRD-IDD

C2CH-3rd_BIRD-IDD

C2CH-4th_BIRD-IDD

PF12874 zf-met 59-81 aa PF22996 C2H2-2nd_BIRD-IDD 96-130 aa PF22995 C2CH-3rd_BIRD-IDD 134-158 aa PF22992 C2CH-4th_BIRD-IDD 161-197 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793946.1`	Pfam	`PF12874`	zf-met	Domain	59	81	0.0002	22.3	Zinc-finger of C2H2 type
`XP_057793946.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	96	130	1.7e-22	79.9	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057793946.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	134	158	1.4e-11	44.5	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057793946.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	161	197	1.1e-21	77.1	BIRD-IDD transcription factor, fourth C2HC zinc finger
`XP_057793947.1`	Pfam	`PF12874`	zf-met	Domain	59	81	0.0002	22.3	Zinc-finger of C2H2 type
`XP_057793947.1`	Pfam	`PF22996`	C2H2-2nd_BIRD-IDD	Family	96	130	1.7e-22	79.9	BIRD-IDD transcription factor, second C2H2 zinc finger
`XP_057793947.1`	Pfam	`PF22995`	C2CH-3rd_BIRD-IDD	Domain	134	158	1.5e-11	44.5	BIRD-IDD transcription factor, third C2HC zinc finger
`XP_057793947.1`	Pfam	`PF22992`	C2CH-4th_BIRD-IDD	Domain	161	197	1.1e-21	77.1	BIRD-IDD transcription factor, fourth C2HC zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057937964.1
TAGCTTCCCGCCAACCACGATTCTTAGCCGCCGCTTCACCCACCTAATCACTCATGTTTAATCACAGACCGCCTTTTCTTTTTCTTCCTTTCCCGTTTTTTTTTGTTACAGCCGCATTATTATCATAATCCACTTCAGAATCTCTCTTTTTGTTTTCTTCTCTCTGTAGATGCAAATGGAAATGAATTAGTGAAAGCGCCGCCGTGTGTGAACATGGGGGTTGGTGGGCAACCGAGTTGAACCGGCGTTTCCCAATTTTT...

XM_057937963.1
CCACGATTCTTAGCCGCCGCTTCACCCACCTAATCACTCATGTTTAATCACAGACCGCCTTTTCTTTTTCTTCCTTTCCCGTTTTTTTTTGTTACAGCCGCATTATTATCATAATCCACTTCAGAATCTCTCTTTTTGTTTTCTTCTCTCTGTAGATGCAAATGGAAATGAATTAGTGAAAGCGCCGCCGTGTGTGAACATGGGGGTTGGTGGGCAACCGAGTTGAACCGGCGTTTCCCAATTTTTGTTTGAGATTTCAA...

CDS

2 records

下载 CDS FASTA

LOC131010441
ATGCAAGAAAACAATATGGTAGAATCCGAGATTTTGTCAACTGAATCCAATATTCTGAATCAAACAAAATTGGATGAGCAGCCAGTAAAGAAAAAACGCAATCTTCCGGGAATGCCTGATCCGGATGCGGATGTGATAGCTCTATCGCCGAAAACGTTGCTGGCGACCAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTCAAAGGGAGCAGAATCTGCAGCTCCACCGGCGCGGCCACAACCTGCCGTGGAAGCT...

Protein

2 records

下载 Protein FASTA

XP_057793946.1
MQENNMVESEILSTESNILNQTKLDEQPVKKKRNLPGMPDPDADVIALSPKTLLATNRFVCEICNKGFQREQNLQLHRRGHNLPWKLRQRSGKELRKRVYVCPEASCVHHNPSRALGDLTGIKKHFCRKHLDKKYKCHRCPKKYALQSDCKAHIKACGTREYSCRCGTLFSRRDSFVTHRAFCDALSRENARSQPPPMVAPLPASSPPPPPLSPSATVLSIQSSELAENSNAELQPPPPPAPTAAATTSNNTRSSSGGFL...

XP_057793947.1
MQENNMVESEILSTESNILNQTKLDEQPVKKKRNLPGMPDPDADVIALSPKTLLATNRFVCEICNKGFQREQNLQLHRRGHNLPWKLRQRSGKELRKRVYVCPEASCVHHNPSRALGDLTGIKKHFCRKHLDKKYKCHRCPKKYALQSDCKAHIKACGTREYSCRCGTLFSRRDSFVTHRAFCDALSRENARSQPPPMVAPLPASSPPPPPLSPSATVLSIQSSATLELAENSNAELQPPPPPAPTAAATTSNNTRSSSG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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