Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003473

染色体: Chr02 坐标: 56040469-56045779 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003473
名称SmilChr02G003473
描述uncharacterized SmilChr02G003473
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向56040469 - 56045779 / +

ID 对照

NCBI Gene IDLOC131010448
GeneID131010448
locus_tag-
NCBI NameLOC131010448
原始查询SmilChr02G003473

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824854]; symbol=AT3G56870; hit=AT3G56870; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824854]; symbol=AT3G56870; hit=AT3G56870; species=arabidopsis; confidence=low
ArabidopsisAT3G56870 (AT3G56870)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:824854]
identity=36.8; qcov=0.342; evalue=2.66e-34; confidence=low
RiceOs03g0594700
-
identity=33.3; qcov=0.353; evalue=4.39e-32; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131010448

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793960.1
2 Chromosome 染色体 0.00000 XP_057793960.1
3 Centromere 着丝粒 0.00000 XP_057793960.1
4 Chromatin 染色质 0.00000 XP_057793960.1
5 Telomere 端粒 0.00000 XP_057793960.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:56041671 TA T 1bp_deletion frameshift_variant 1 C85
Chr2:56041671 TA T 1bp_deletion CDS_variant 1 C85
Chr2:56041916 C T EMS_canonical_SNV CDS_variant 1 C22
Chr2:56041996 G A EMS_canonical_SNV CDS_variant 1 A21
Chr2:56042070 G A EMS_canonical_SNV CDS_variant 2 B35,B44
Chr2:56042172 C T EMS_canonical_SNV CDS_variant 1 A21
Chr2:56042222 C T EMS_canonical_SNV CDS_variant 1 B70
Chr2:56042564 G A EMS_canonical_SNV CDS_variant 2 B65,B72
Chr2:56042587 C T EMS_canonical_SNV CDS_variant 1 B59
Chr2:56042626 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:56042636 G A EMS_canonical_SNV CDS_variant 1 B2
Chr2:56043210 G A EMS_canonical_SNV CDS_variant 1 C71

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057937978.1
GAATTTGAAGTAGATGAGTATCTATAGATTAAAATGAGGGGAAACAAAAATCTGAAATTTGAATTTTCACCAAAAATCGGCTTTGTGAAGGCGGTTCCGTGCCTGGCCGGTTCCAGTTACCCTGGACAACGCTAACGCGATTGGCCAATTTCAGAAAAGCGAATCCCTACTTACTTCCCGCCAAACCGTCTGCCGCGAATTACTTGAATCTTACAAATATACCGCACTCCATTTCACTAGCATCTCTCTCCTTTTCTCTC...
XM_057937977.1
AATTTGAAGTAGATGAGTATCTATAGATTAAAATGAGGGGAAACAAAAATCTGAAATTTGAATTTTCACCAAAAATCGGCTTTGTGAAGGCGGTTCCGTGCCTGGCCGGTTCCAGTTACCCTGGACAACGCTAACGCGATTGGCCAATTTCAGAAAAGCGAATCCCTACTTACTTCCCGCCAAACCGTCTGCCGCGAATTACTTGAATCTTACAAATATACCGCACTCCATTTCACTAGCATCTCTCTCCTTTTCTCTCT...

CDS

2 records

下载 CDS FASTA
LOC131010448
ATGGAGCTGAGGAATTGCAGTGTTAAGCATTTTATCCAAACTATTAGGGATGGGTTGGTGATAAAAGTTTGCAATATCAATGCCAATGGAAGGCCAGTGACTCGAACCAAGATTTTGAAGGATGTATATGATAGTGAAGATGCCAAAAGACTACAGAAGACTCCTTCAGGTTCGCTTTTTGTTAATAAACAAGTGAACCATGGAAGTTCGTGTTTTCCGGTGGCTGCTAGGGCATTATGGGAAACAAAATCTGAACCTAG...
LOC131010448
ATGGAGCTGAGGAATTGCAGTGTTAAGCATTTTATCCAAACTATTAGGGATGGGTTGGTGATAAAAGTTTGCAATATCAATGCCAATGGAAGGCCAGTGACTCGAACCAAGATTTTGAAGGATGTATATGATAGTGAAGATGCCAAAAGACTACAGAAGACTCCTTCAGGTTCGCTTTTTGTTAATAAACAAGTGAACCATGGAAGTTCGTGTTTTCCGGTGGCTGCTAGGGCATTATGGGAAACAAAATCTGAACCTAG...

Protein

2 records

下载 Protein FASTA
XP_057793960.1
MELRNCSVKHFIQTIRDGLVIKVCNINANGRPVTRTKILKDVYDSEDAKRLQKTPSGSLFVNKQVNHGSSCFPVAARALWETKSEPSDSAPSADGDSDSDVNDAITLSQLKNRLLTKRRKYVPADEKAVEDESDLNEPLINFKSKHSKATWAKRRRLNSSSISSATIEVTIKSEENLVSEGSEQAGGEPTPLIRIKVEAPDAEQLGGYNEMPSASSAGHNVVVNSGQITVLPDHDREPYEECLTNEVSYDHLEDVEPISV...
XP_057793961.1
MELRNCSVKHFIQTIRDGLVIKVCNINANGRPVTRTKILKDVYDSEDAKRLQKTPSGSLFVNKQVNHGSSCFPVAARALWETKSEPSDSAPSADGDSDSDVNDAITLSQLKNRLLTKRRKYVPADEKAVEDESDLNEPLINFKSKHSKATWAKRRRLNSSSISSATIEVTIKSEENLVSEGSEQAGGEPTPLIRIKVEAPDAEQLGGYNEMPSASSAGHNVVVNSGQITVLPDHDREPYEECLTNEVSYDHLEDVEPISV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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