Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003477`

染色体: Chr02 坐标: 56065876-56072985 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003477`
名称	SmilChr02G003477
描述	CST complex subunit CTC1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56065876 - 56072985 / `-`

ID 对照

NCBI Gene ID	`LOC131010452`
GeneID	`131010452`
locus_tag	`-`
NCBI Name	`LOC131010452`
原始查询	`SmilChr02G003477`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	CST complex subunit CTC1
产物	CST complex subunit CTC1
Arabidopsis	`AT4G09680` (CTC1) conserved telomere maintenance component 1 [Source:NCBI gene (formerly Entrezgene);Acc:826554] identity=32.2; qcov=0.999; evalue=4.25e-157; confidence=low
Rice	`Os09g0376000` - identity=33.2; qcov=0.362; evalue=1.8e-60; confidence=low
GO	GO:0003697 (single-stranded DNA binding); GO:0010833 (telomere maintenance via telomere lengthening); GO:0042162 (telomeric repeat DNA binding); GO:0045740 (positive regulation of DNA replication); GO:1990879 (CST complex)
KEGG	-
Pfam	PF15491 (CTC1_N_plant); PF30826 (CTC1_2nd_plant); PF30827 (CTC1_3rd)
InterPro	-
eggNOG	-
NR	GeneID:131010452

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793964.1`
2	Chromosome	染色体	0.40000	`XP_057793964.1`
3	Telomere	端粒	0.20000	`XP_057793964.1`
4	Centromere	着丝粒	0.00000	`XP_057793964.1`
5	Chromatin	染色质	0.00000	`XP_057793964.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56066141`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,B64,C36
`Chr2:56066203`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B107,C28,C3
`Chr2:56066205`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B91,C87,D2
`Chr2:56066248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B59,B61,C30
`Chr2:56066468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B24,B33,B95,C48
`Chr2:56066502`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A5,B28,B59,B99,C49
`Chr2:56066602`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B91,C87,D2
`Chr2:56066646`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,B61,C30
`Chr2:56067333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr2:56067644`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B59,B61,C30
`Chr2:56068323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:56068330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793964.1

1358 aa

679

1358

CTC1_N_plant

CTC1_2nd_plant

CTC1_3rd

PF15491 CTC1_N_plant 8-143 aa PF30826 CTC1_2nd_plant 178-293 aa PF30827 CTC1_3rd 322-409 aa

XP_057793965.1

1335 aa

668

1335

CTC1_N_plant

CTC1_2nd_plant

CTC1_3rd

PF15491 CTC1_N_plant 8-143 aa PF30826 CTC1_2nd_plant 178-293 aa PF30827 CTC1_3rd 322-409 aa

XP_057793966.1

1290 aa

645

1290

CTC1_N_plant

CTC1_2nd_plant

CTC1_3rd

PF15491 CTC1_N_plant 8-143 aa PF30826 CTC1_2nd_plant 178-293 aa PF30827 CTC1_3rd 322-409 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793964.1`	Pfam	`PF15491`	CTC1_N_plant	Domain	8	143	2.4e-31	109.6	CST, telomere maintenance, complex subunit CTC1 N-terminal domain
`XP_057793964.1`	Pfam	`PF30826`	CTC1_2nd_plant	Domain	178	293	7.4e-31	107.4	CST, telomere maintenance, complex subunit CTC1 second domain
`XP_057793964.1`	Pfam	`PF30827`	CTC1_3rd	Domain	322	409	4.3e-08	33.9	CST, telomere maintenance, complex subunit CTC1 third domain
`XP_057793965.1`	Pfam	`PF15491`	CTC1_N_plant	Domain	8	143	2.3e-31	109.6	CST, telomere maintenance, complex subunit CTC1 N-terminal domain
`XP_057793965.1`	Pfam	`PF30826`	CTC1_2nd_plant	Domain	178	293	7.3e-31	107.5	CST, telomere maintenance, complex subunit CTC1 second domain
`XP_057793965.1`	Pfam	`PF30827`	CTC1_3rd	Domain	322	409	4.2e-08	33.9	CST, telomere maintenance, complex subunit CTC1 third domain
`XP_057793966.1`	Pfam	`PF15491`	CTC1_N_plant	Domain	8	143	2.2e-31	109.6	CST, telomere maintenance, complex subunit CTC1 N-terminal domain
`XP_057793966.1`	Pfam	`PF30826`	CTC1_2nd_plant	Domain	178	293	6.8e-31	107.6	CST, telomere maintenance, complex subunit CTC1 second domain
`XP_057793966.1`	Pfam	`PF30827`	CTC1_3rd	Domain	322	409	4e-08	34.0	CST, telomere maintenance, complex subunit CTC1 third domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057937982.1
AATGTCGTCAAACGATAACTTTGATGATGGTTCAAGTTCTAGTTTGATTTTTTCGATTTGACAATTTTGATGATGAATGATGACATGAAGGTTTTACATTATGAAATCAAGCAATTGACTCCATGATAGAGGATGTCTGCTTCTATTCTTACGACTTACTCCCAATAGAGCCCTACGACGACTCATTGAACGACAATGTGCAAAGGGCAAAATTTAAAATTATAGTACTAGTAGTTAGCTTCTTCAAGAAGAGTGAAGGA...

XM_057937981.1
TGTCGTCAAACGATAACTTTGATGATGGTTCAAGTTCTAGTTTGATTTTTTCGATTTGACAATTTTGATGATGAATGATGACATGAAGGTTTTACATTATGAAATCAAGCAATTGACTCCATGATAGAGGATGTCTGCTTCTATTCTTACGACTTACTCCCAATAGAGCCCTACGACGACTCATTGAACGACAATGTGCAAAGGGCAAAATTTAAAATTATAGTACTAGTAGTTAGCTTCTTCAAGAAGAGTGAAGGATT...

CDS

3 records

下载 CDS FASTA

LOC131010452
ATGGAAGACAACCCAACCACTACATTAACTATCTCCAATCTCATCAAGTCCGGCCGCCCCCTCACGGCCGCCTCATCTCTTGTTCCTAGCCGCCCCATCGACCTTCTCAAGACTTCCAACCAAAACCCCTGCTGCCGGAATTCCATCTGCCAAAACCCTAACGTACAAACCCTTAAACCTTTCAAACACTCAGCACTCCTTATTGGAACTCTCAACCTACCATCTTCCGAAGATCGCTATTCCCCGCTTCAATGTAATTG...

Protein

3 records

下载 Protein FASTA

XP_057793964.1
MEDNPTTTLTISNLIKSGRPLTAASSLVPSRPIDLLKTSNQNPCCRNSICQNPNVQTLKPFKHSALLIGTLNLPSSEDRYSPLQCNCFQFSDDDSTTICCEILDFDTKMIGQKIRILAWNFIPFERQNRGVKGGFLEIITWDFFQACCGSRCSLLDCSCFCLSLGNCDVGESSMAHKLIFGVIMSISPVSTVPWASEGGDSRGVRGFLVHILVCQCKGCASKHLVSELRGLCERNVKDHRFIQSTIVYFCGVTSSWHPVI...

XP_057793965.1
MEDNPTTTLTISNLIKSGRPLTAASSLVPSRPIDLLKTSNQNPCCRNSICQNPNVQTLKPFKHSALLIGTLNLPSSEDRYSPLQCNCFQFSDDDSTTICCEILDFDTKMIGQKIRILAWNFIPFERQNRGVKGGFLEIITWDFFQACCGSRCSLLDCSCFCLSLGNCDVGESSMAHKLIFGVIMSISPVSTVPWASEGGDSRGVRGFLVHILVCQCKGCASKHLVSELRGLCERNVKDHRFIQSTIVYFCGVTSSWHPVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器