Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003483`

染色体: Chr02 坐标: 56096161-56104747 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003483`
名称	SmilChr02G003483
描述	glucose-6-phosphate isomerase, cytosolic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56096161 - 56104747 / `-`

ID 对照

NCBI Gene ID	`LOC131010454`
GeneID	`131010454`
locus_tag	`-`
NCBI Name	`LOC131010454`
原始查询	`SmilChr02G003483`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucose-6-phosphate isomerase, cytosolic
产物	glucose-6-phosphate isomerase%2C cytosolic
Arabidopsis	`AT5G42740` (AT5G42740) Sugar isomerase (SIS) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834283] identity=84.7; qcov=0.981; evalue=0; confidence=high
Rice	`Os06g0256500` (Pgi2(Pgib)) - identity=79.8; qcov=1; evalue=0; confidence=high
GO	GO:0004347 (glucose-6-phosphate isomerase activity); GO:0005829 (cytosol); GO:0006094 (gluconeogenesis); GO:0006096 (glycolytic process); GO:0048029 (monosaccharide binding); GO:0051156 (glucose 6-phosphate metabolic process); GO:0097367 (carbohydrate derivative binding)
KEGG	smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00342 (PGI)
InterPro	-
eggNOG	-
NR	GeneID:131010454

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057793968.1`
2	Cytoplasm	细胞质	0.80000	`XP_057793968.1`
3	Peroxisome	过氧化物酶体	0.20000	`XP_057793968.1`
4	Nucleus	细胞核	0.00000	`XP_057793968.1`
5	Chromosome	染色体	0.00000	`XP_057793968.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56096416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:56097985`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,C28
`Chr2:56099489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C21
`Chr2:56099539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:56100476`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:56102867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B100,C29,C48,C6
`Chr2:56102963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B1,B19
`Chr2:56103640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B40,B61,C30,D10
`Chr2:56103675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B122
`Chr2:56103806`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B23
`Chr2:56103839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:56103850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C13,C77,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793968.1

568 aa

284

568

PGI

PF00342 PGI 51-547 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793968.1`	Pfam	`PF00342`	PGI	Domain	51	547	7.8e-216	718.1	Phosphoglucose isomerase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937985.1
ACCGGATCCATTTCGATCATCACGTGACCTCTCAATTTTTTTCTTTTCTTTTCTTGAGCTTGGCACGTGACTTGTTCGTCTGCATCCTAGTATTTTATAATTTTCGCTTTTCCTCTGCATTTTCACAATTTGCTGTTTTCATTTCCGTTCATTGCTGATCTCACTTAAGACGAGATGGCGTCGTCTGCTCTAATCTGTGAAACTGATGCGTGGAAGGATTTGAGGGCCCATGTTGAAAGCATTAAGAAGACTCATCTGCG...

CDS

1 records

下载 CDS FASTA

LOC131010454
ATGGCGTCGTCTGCTCTAATCTGTGAAACTGATGCGTGGAAGGATTTGAGGGCCCATGTTGAAAGCATTAAGAAGACTCATCTGCGTGAATTGATGAGCGACACGAAGAGATGCCAGTCCATGATGGTTGAGTTTGATGGGTTATTGTTGGATTACTCAAGGCAATGTGCCACTGTCGATACATTCAATAAGCTCAACAAATTAGCAGAGGCAGCACATCTGAAAGAAAAGATTAATCTGATGTTCAATGGAGAGCGTAT...

Protein

1 records

下载 Protein FASTA

XP_057793968.1
MASSALICETDAWKDLRAHVESIKKTHLRELMSDTKRCQSMMVEFDGLLLDYSRQCATVDTFNKLNKLAEAAHLKEKINLMFNGERINSTENRSVLHVALRAPRGSVINSDGKNVVPDVWQVLDKIKDFSERVRSGAWVGATGKALTNVIAIGIGGSFLGPLFVHTALQTDPEAAELASGRKLHFLANVDPIDVARNITGLNPETTLVVVVSKTFTTAETMLNARTIREWISAALGPQAVAKHMVAVSTNLTLVEKFGID...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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