Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003504`

染色体: Chr02 坐标: 56226684-56230646 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003504`
名称	SmilChr02G003504
描述	GPN-loop GTPase QQT2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56226684 - 56230646 / `+`

ID 对照

NCBI Gene ID	`LOC131010470`
GeneID	`131010470`
locus_tag	`-`
NCBI Name	`LOC131010470`
原始查询	`SmilChr02G003504`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GPN-loop GTPase QQT2-like
产物	GPN-loop GTPase QQT2-like
Arabidopsis	`AT4G21800` (QQT2) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828268] identity=75.7; qcov=0.908; evalue=0; confidence=high
Rice	`Os03g0312600` - identity=74.4; qcov=0.924; evalue=0; confidence=high
GO	GO:0003924 (GTPase activity)
KEGG	-
Pfam	PF02492 (cobW); PF03029 (ATP_bind_1)
InterPro	-
eggNOG	-
NR	GeneID:131010470

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057793990.1`
2	Nucleus	细胞核	0.60000	`XP_057793990.1`
3	Chromosome	染色体	0.00000	`XP_057793990.1`
4	Centromere	着丝粒	0.00000	`XP_057793990.1`
5	Chromatin	染色质	0.00000	`XP_057793990.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56229292`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C71
`Chr2:56229292`	`TA`	`T`	1bp_deletion	CDS_variant	1	C71
`Chr2:56229418`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C45
`Chr2:56229418`	`TC`	`T`	1bp_deletion	CDS_variant	1	C45
`Chr2:56229448`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A23,B14,B44,C4
`Chr2:56229488`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr2:56229954`	`C`	`CG`	1bp_insertion	frameshift_variant	1	B57
`Chr2:56229954`	`C`	`CG`	1bp_insertion	CDS_variant	1	B57
`Chr2:56230013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:56230310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:56230329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793990.1

380 aa

190

380

cobW

ATP_bind_1

PF02492 cobW 46-229 aa PF03029 ATP_bind_1 49-287 aa

XP_057793991.1

380 aa

190

380

cobW

ATP_bind_1

PF02492 cobW 46-229 aa PF03029 ATP_bind_1 49-287 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793990.1`	Pfam	`PF02492`	cobW	Domain	46	229	3.7e-05	24.1	CobW/HypB/UreG, nucleotide-binding domain
`XP_057793990.1`	Pfam	`PF03029`	ATP_bind_1	Domain	49	287	1.1e-78	265.1	Conserved hypothetical ATP binding protein
`XP_057793991.1`	Pfam	`PF02492`	cobW	Domain	46	229	3.7e-05	24.1	CobW/HypB/UreG, nucleotide-binding domain
`XP_057793991.1`	Pfam	`PF03029`	ATP_bind_1	Domain	49	287	1.1e-78	265.1	Conserved hypothetical ATP binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938008.1
AAGGCAAATATCAAAAACCCCAAAACCCCAGAATTGAAAAAACCCTTCTTCCCATACGCGATTCCGGCTGCTGCAGCCACACCCCGCCGCTGCCGTCACGCCTCGTCGCTGCCGCTTCTCGTCATCCTCTTTGCTCCTCCGAGCCCCTCCGTCGCTTCTCGGTTCGCCTGCAGCACCTCCAGCTGCTCGTTCGCCACCGCCGCTCCTTGGCTAAGGTTGAGTCTTATAAAGTCACGAGATATGGACATCGACTCAAAAGC...

XM_057938007.1
TGGTCATTTAATGCTAGGGGACACCATGTCTTTCTATCTCAAGAATCACTTTCAATTTGGATAATTTTAGATCATCATCAGAATTTGGAAATCCTTACTGCTACCCATTTTTAAGGTTGAGTCTTATAAAGTCACGAGATATGGACATCGACTCAAAAGCACCTGAAACTGCTGCATCAGTGGATACACAAAGTAAAGATGCTGACAACATATCCAAAACAATGGAGCAATTGAATATTGGAGAATCCTCCTCTAGCTTC...

CDS

2 records

下载 CDS FASTA

LOC131010470
ATGGACATCGACTCAAAAGCACCTGAAACTGCTGCATCAGTGGATACACAAAGTAAAGATGCTGACAACATATCCAAAACAATGGAGCAATTGAATATTGGAGAATCCTCCTCTAGCTTCAAGAAGAAACCAGTTATCATTATAGTTGTGGGAATGGCAGGATGTGGAAAGACTACATTTCTTCACCGGCTAGTCAGCCACACTATGACATCAAATATTCGAGGTTATGTTATGAATCTTGATCCTGCTATTCTGACACT...

Protein

2 records

下载 Protein FASTA

XP_057793990.1
MDIDSKAPETAASVDTQSKDADNISKTMEQLNIGESSSSFKKKPVIIIVVGMAGCGKTTFLHRLVSHTMTSNIRGYVMNLDPAILTLPFGANIDIRDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVISMIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVIAYVVDTPRSASPATFMSNMLYACSILYKTRLPLVLVFNKTDVAQHEFALEWMKDFEVFHAALDSDHSYTSTLTRSLSLSLEEFY...

XP_057793991.1
MDIDSKAPETAASVDTQSKDADNISKTMEQLNIGESSSSFKKKPVIIIVVGMAGCGKTTFLHRLVSHTMTSNIRGYVMNLDPAILTLPFGANIDIRDTVRYKEVMKQFNLGPNGGILTSLNLFATKFDEVISMIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVIAYVVDTPRSASPATFMSNMLYACSILYKTRLPLVLVFNKTDVAQHEFALEWMKDFEVFHAALDSDHSYTSTLTRSLSLSLEEFY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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