当前解析结果
SmilChr02G003507| 统一新 Gene ID | SmilChr02G003507 |
|---|---|
| 名称 | SmilChr02G003507 |
| 描述 | uncharacterized SmilChr02G003507 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 56251746 - 56264745 / + |
| NCBI Gene ID | LOC131010474 |
|---|---|
| GeneID | 131010474 |
| locus_tag | - |
| NCBI Name | LOC131010474 |
| 原始查询 | SmilChr02G003507 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843858]; symbol=AT1G75210; hit=AT1G75210; species=arabidopsis; confidence=high |
| 产物 | HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843858]; symbol=AT1G75210; hit=AT1G75210; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G75210 (AT1G75210)HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843858] identity=77; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0774300- identity=70.4; qcov=0.992; evalue=0; confidence=high |
| GO | GO:0008253 (5'-nucleotidase activity) |
| KEGG | - |
| Pfam | PF05761 (5_nucleotid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010474 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057793996.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057793997.1 |
| 3 | Mitochondrion | 线粒体 | 0.80000 | XP_057793996.1 |
| 4 | Cytoplasm | 细胞质 | 0.60000 | XP_057793997.1 |
| 5 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057793996.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:56259445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793996.1PF05761
5_nucleotid 100-585 aa
XP_057793997.1PF05761
5_nucleotid 38-523 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793996.1 |
Pfam | PF05761 |
5_nucleotid | Family | 100 | 585 | 1.5e-176 | 588.6 | 5' nucleotidase family |
XP_057793997.1 |
Pfam | PF05761 |
5_nucleotid | Family | 38 | 523 | 1e-176 | 589.1 | 5' nucleotidase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。