Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003507

染色体: Chr02 坐标: 56251746-56264745 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003507
名称SmilChr02G003507
描述uncharacterized SmilChr02G003507
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向56251746 - 56264745 / +

ID 对照

NCBI Gene IDLOC131010474
GeneID131010474
locus_tag-
NCBI NameLOC131010474
原始查询SmilChr02G003507

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843858]; symbol=AT1G75210; hit=AT1G75210; species=arabidopsis; confidence=high
产物HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843858]; symbol=AT1G75210; hit=AT1G75210; species=arabidopsis; confidence=high
ArabidopsisAT1G75210 (AT1G75210)
HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase [Source:NCBI gene (formerly Entrezgene);Acc:843858]
identity=77; qcov=1.01; evalue=0; confidence=high
RiceOs03g0774300
-
identity=70.4; qcov=0.992; evalue=0; confidence=high
GOGO:0008253 (5'-nucleotidase activity)
KEGG-
PfamPF05761 (5_nucleotid)
InterPro-
eggNOG-
NRGeneID:131010474

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057793996.1
2 Cytosol 细胞质基质 1.00000 XP_057793997.1
3 Mitochondrion 线粒体 0.80000 XP_057793996.1
4 Cytoplasm 细胞质 0.60000 XP_057793997.1
5 Mitochondrion matrix 线粒体基质 0.20000 XP_057793996.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:56259445 C T EMS_canonical_SNV CDS_variant 2 B133,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057793996.1
590 aa
N
1
295
590
5_nucleotid
C
PF05761 5_nucleotid 100-585 aa
XP_057793997.1
528 aa
N
1
264
528
5_nucleotid
C
PF05761 5_nucleotid 38-523 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793996.1 Pfam PF05761 5_nucleotid Family 100 585 1.5e-176 588.6 5' nucleotidase family
XP_057793997.1 Pfam PF05761 5_nucleotid Family 38 523 1e-176 589.1 5' nucleotidase family

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XR_009096563.1
CTTTATCCGTGGCCATAAAAATTAATTTGGATACACAAAATAAAAACATATTTTCCAGGCAGGAAATTAGCCTGCTGTCCCCATCAATTTGGCTAAAATACGCCTGTGCGTCTTCCTCACTACTCTTCTCCTCTTCCCAGCCTGTCAGTTTTTCCGTTACTACTCCAAATTAAAAAATATACAAGCACACAACACGTTCGCCAAAATTCCACAACCAAATTCGATTAACAAAATCCCAGAAGAATCCAAAATTCCGCCAA...
XM_057938013.1
CTTTATCCGTGGCCATAAAAATTAATTTGGATACACAAAATAAAAACATATTTTCCAGGCAGGAAATTAGCCTGCTGTCCCCATCAATTTGGCTAAAATACGCCTGTGCGTCTTCCTCACTACTCTTCTCCTCTTCCCAGCCTGTCAGTTTTTCCGTTACTACTCCAAATTAAAAAATATACAAGCACACAACACGTTCGCCAAAATTCCACAACCAAATTCGATTAACAAAATCCCAGAAGAATCCAAAATTCCGCCAA...

CDS

2 records

下载 CDS FASTA
LOC131010474
ATGCGTATCATTAGAGGACGCTCTTTTTCATTTTACGTCTCCTTGTTTTCTGCTCCCTCCTCGTCTTCCTCCCCATTTCCGTCCAGGATTTTGCATTTTCATTCCCGTGGCTTTTGTTCTTCGATCTCCGATCGGTTTCCGAGTAGAAGGAAGGTCTATCGCAGCAGAGAGGAGTCAAGTAAAACCATGGACAGCAAAATAATGCAGTTTGAGAGGACTAGCTCCGGCGAGGTTGATAAACACCCTTGTGTGTGGTCTTC...
LOC131010474
ATGGACAGCAAAATAATGCAGTTTGAGAGGACTAGCTCCGGCGAGGTTGATAAACACCCTTGTGTGTGGTCTTCTCCTGAAGGAGGACAAATGATTGACATAGGAAAGCAGATCTTCTGCAATAGATCTCTAAACATGCGTAATATAGTTGCTGTCGGATTTGATATGGATTATACGCTGGCGCAGTATAAACCAGAGACATTTGAATCACTTGCCTATGAAGGCACAGTAAAAAAGCTAGTTCATGATTTGGGATACCC...

Protein

2 records

下载 Protein FASTA
XP_057793996.1
MRIIRGRSFSFYVSLFSAPSSSSSPFPSRILHFHSRGFCSSISDRFPSRRKVYRSREESSKTMDSKIMQFERTSSGEVDKHPCVWSSPEGGQMIDIGKQIFCNRSLNMRNIVAVGFDMDYTLAQYKPETFESLAYEGTVKKLVHDLGYPAELLGWSFDWTYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFRELSKEEKVATYGSTLIRDAFDEPEYALIDTLFSLAEAYLFAQLVDFKDNNLGKIPADYSRMYKDVRAA...
XP_057793997.1
MDSKIMQFERTSSGEVDKHPCVWSSPEGGQMIDIGKQIFCNRSLNMRNIVAVGFDMDYTLAQYKPETFESLAYEGTVKKLVHDLGYPAELLGWSFDWTYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFRELSKEEKVATYGSTLIRDAFDEPEYALIDTLFSLAEAYLFAQLVDFKDNNLGKIPADYSRMYKDVRAAVDLCHRDGTLKKMVAKDPQRYINEDSSIVPMLKMLRDSGRATFLVTNSLWDYTNIVMNFLCG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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