Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003526`

染色体: Chr02 坐标: 56415528-56416856 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003526`
名称	SmilChr02G003526
描述	isoflavone reductase-like protein
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56415528 - 56416856 / `+`

ID 对照

NCBI Gene ID	`LOC131010491`
GeneID	`131010491`
locus_tag	`-`
NCBI Name	`LOC131010491`
原始查询	`SmilChr02G003526`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	isoflavone reductase-like protein
产物	isoflavone reductase-like protein
Arabidopsis	`AT1G75290` (AT1G75290) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843866] identity=67.4; qcov=0.993; evalue=6.48e-152; confidence=high
Rice	`Os06g0472200` - identity=58.1; qcov=0.99; evalue=2.39e-130; confidence=high
GO	GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF03435 (Sacchrp_dh_NADP); PF05368 (NmrA); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131010491

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057794008.1`
2	Cytoplasm	细胞质	0.60000	`XP_057794008.1`
3	Nucleus	细胞核	0.00000	`XP_057794008.1`
4	Chromosome	染色体	0.00000	`XP_057794008.1`
5	Centromere	着丝粒	0.00000	`XP_057794008.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56415638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C43
`Chr2:56415697`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B130
`Chr2:56415697`	`TC`	`T`	1bp_deletion	CDS_variant	1	B130
`Chr2:56415885`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B17
`Chr2:56416085`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr2:56416172`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C26,C87,D11
`Chr2:56416187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,C42
`Chr2:56416241`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B130,B78,C3,C61,D3
`Chr2:56416256`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,C58,D2
`Chr2:56416496`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr2:56416521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B9
`Chr2:56416535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C29,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794008.1

306 aa

153

306

NmrA

Epimerase

Sacchrp_dh_NADP

GDP_Man_Dehyd

3Beta_HSD

NAD_binding_10

PF05368 NmrA 3-302 aa PF01370 Epimerase 5-83 aa PF03435 Sacchrp_dh_NADP 5-89 aa PF16363 GDP_Man_Dehyd 6-76 aa PF01073 3Beta_HSD 6-91 aa PF13460 NAD_binding_10 9-148 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794008.1`	Pfam	`PF05368`	NmrA	Family	3	302	2.9e-93	313.4	NmrA-like family
`XP_057794008.1`	Pfam	`PF01370`	Epimerase	Family	5	83	2.4e-08	34.4	NAD dependent epimerase/dehydratase family
`XP_057794008.1`	Pfam	`PF03435`	Sacchrp_dh_NADP	Family	5	89	4.9e-06	27.6	Saccharopine dehydrogenase NADP binding domain
`XP_057794008.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	6	76	5.4e-07	30.1	GDP-mannose 4,6 dehydratase
`XP_057794008.1`	Pfam	`PF01073`	3Beta_HSD	Family	6	91	2.2e-06	27.6	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057794008.1`	Pfam	`PF13460`	NAD_binding_10	Domain	9	148	3.3e-13	50.6	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938025.1
TAGAAAAAAGTAAAAAAAAAAATGGGAGAGAAGATCTTGATCATCGGTGGAACAGGATACATCGGCAAATTCGTAGTTGAGGCCAGCGCTAAATCTGGGCATCCCACTTTCGCTTTGATGAGAGAGGCATCCCTCTCTGATCCAGCCAAATCTGAGCTCGTCCAAACCTTCAAGAATTCTGGTGTCACCTTCCTAATTGGAGATCTGAATGATCACGAGAGCTTGGTGAAGGCTATAAAGCAAGTGGATGTGGTTATATC...

CDS

1 records

下载 CDS FASTA

LOC131010491
ATGGGAGAGAAGATCTTGATCATCGGTGGAACAGGATACATCGGCAAATTCGTAGTTGAGGCCAGCGCTAAATCTGGGCATCCCACTTTCGCTTTGATGAGAGAGGCATCCCTCTCTGATCCAGCCAAATCTGAGCTCGTCCAAACCTTCAAGAATTCTGGTGTCACCTTCCTAATTGGAGATCTGAATGATCACGAGAGCTTGGTGAAGGCTATAAAGCAAGTGGATGTGGTTATATCAACCGTGGGCTTCATGCAGAT...

Protein

1 records

下载 Protein FASTA

XP_057794008.1
MGEKILIIGGTGYIGKFVVEASAKSGHPTFALMREASLSDPAKSELVQTFKNSGVTFLIGDLNDHESLVKAIKQVDVVISTVGFMQIADQYKIIAAIKEAGNVKRFLPSEFGGDLDRCRAVDPINQNFQLKIQLRRAIEAEGIPYTYIVCNLFAGYALSNFLQLGATAPPRDKIVIPGDGNVKAVFNEEHDIGAYTVKASVDPRTLNKILYIKPPHNIYSFNELVACWEKKIGNTLEKIYVAEDELLKQIEESPMPVNVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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