Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003536`

染色体: Chr02 坐标: 56508006-56515167 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003536`
名称	SmilChr02G003536
描述	auxilin-like protein 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56508006 - 56515167 / `+`

ID 对照

NCBI Gene ID	`LOC131010503`
GeneID	`131010503`
locus_tag	`-`
NCBI Name	`LOC131010503`
原始查询	`SmilChr02G003536`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	auxilin-like protein 1
产物	auxilin-like protein 1
Arabidopsis	`AT1G75310` (AUL1) auxin-like 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843868] identity=52.8; qcov=0.163; evalue=2.89e-45; confidence=weak
Rice	`Os05g0579900` (OsDjC52) - identity=54.1; qcov=0.165; evalue=2.74e-51; confidence=weak
GO	GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131010503

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoskeleton	细胞骨架	0.80000	`XP_057794020.1`
2	Cytosol	细胞质基质	0.40000	`XP_057794019.1`
3	Nucleus membrane	核膜	0.20000	`XP_057794019.1`
4	Cell membrane	细胞膜	0.20000	`XP_057794020.1`
5	Nucleus	细胞核	0.00000	`XP_057794020.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56508449`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr2:56510602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr2:56510934`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:56510935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr2:56510947`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C74
`Chr2:56510947`	`TG`	`T`	1bp_deletion	CDS_variant	1	C74
`Chr2:56511237`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B13,C12,C2,C86
`Chr2:56511283`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:56511652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr2:56512301`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B19
`Chr2:56512301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B19
`Chr2:56512533`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C50

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938036.1
CTCTCACATCAATCGTTTTCTCTCTCCTCCCCTTTCTCCTTCGTTTTGTCTGACTCTGCAGAACTTTTTTCCCTCTTCAGACAACTAAAGCCTGTCTCACCGAACAGGAAGAAGCAAACCCCCCCCCCCCCCCCCAAAATTCCAGAAAAAATCGAGTCAAAAACCCTAGGCGAACACAACCTGCTACAAAGTCCCTATCTCTCTCCATTTTCATGGAATCTCTCTCCAAATCTTCGCACAGGAGAAAGCACTCAACTACG...

XM_057938037.1
ACTAAAGCCTGTCTCACCGAACAGGAAGAAGCAAACCCCCCCCCCCCCCCCCAAAATTCCAGAAAAAATCGAGTCAAAAACCCTAGGCGAACACAACCTGCTACAAAGTCCCTATCTCTCTCCATTTTCATGGAATCTCTCTCCAAATCTTCGCACAGGAGAAAGCACTCAACTACGACGGCGAATGTCTTCTCCTCATCTTTCTCCTTCAAGAACCCCTACGGAGACGTTTTGCTGCCGAATGGAGCTGAGAGGAAGTC...

CDS

2 records

下载 CDS FASTA

LOC131010503
ATGGAATCTCTCTCCAAATCTTCGCACAGGAGAAAGCACTCAACTACGACGGCGAATGTCTTCTCCTCATCTTTCTCCTTCAAGAACCCCTACGGAGACGTTTTGCTGCCGAATGGAGCTGAGAGGAAGTCGCTACAAGTTCACGAGTACTCCGAGATTTTCTCCGGCTCCTCTTCCATTCCAGTGCTTGATCTTTCGGCCATGGACGAGCGGGTCGCGTTGGGCGATCTCCGGAGCTCCAAGCTCGATTACACCAACAT...

Protein

2 records

下载 Protein FASTA

XP_057794019.1
MESLSKSSHRRKHSTTTANVFSSSFSFKNPYGDVLLPNGAERKSLQVHEYSEIFSGSSSIPVLDLSAMDERVALGDLRSSKLDYTNIFSGLTHDDVFVPYEELLNGSAKRAKPRIPMEGRPHRQESGSRHSSRKTQRSPGVASDQSIDRVKLQESGSPPSIVKMERPSGVASDPSFDEGKLQESGSLHPSIKTERPSGVVSEQSTDGSEQQFNLSFNRTNQINVDASDAKTHIAELHAVPGFTHFVDGGRPHKGKNDRPP...

XP_057794020.1
MESLSKSSHRRKHSTTTANVFSSSFSFKNPYGDVLLPNGAERKSLQVHEYSEIFSGSSSIPVLDLSAMDERVALGDLRSSKLDYTNIFSGLTHDDVFVPYEELLNGSAKRAKPRIPMEGRPHRQESGSRHSSRKTQRSPGVASDQSIDRVKLQESGSPPSIVKMERPSGVASDPSFDEGKLQESGSLHPSIKTERPSGVVSEQSTDGSEQQFNLSFNRTNQINVDASDAKTHIAELHAVPGFTHFVDGGRPHKGKNDRPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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