Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003564`

染色体: Chr02 坐标: 56816110-56818288 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003564`
名称	SmilChr02G003564
描述	3-ketoacyl-CoA synthase 4-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	56816110 - 56818288 / `+`

ID 对照

NCBI Gene ID	`LOC131010528`
GeneID	`131010528`
locus_tag	`-`
NCBI Name	`LOC131010528`
原始查询	`SmilChr02G003564`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-ketoacyl-CoA synthase 4-like
产物	3-ketoacyl-CoA synthase 4-like
Arabidopsis	`AT1G19440` (KCS4) 3-ketoacyl-CoA synthase 4 [Source:NCBI gene (formerly Entrezgene);Acc:838528] identity=82.1; qcov=0.998; evalue=0; confidence=high
Rice	`Os05g0568000` (KCS1) - identity=82; qcov=0.95; evalue=0; confidence=high
GO	GO:0006633 (fatty acid biosynthetic process); GO:0016020 (membrane); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	smil00062 (Fatty acid elongation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF02797 (Chal_sti_synt_C); PF08392 (FAE1_CUT1_RppA); PF08541 (ACP_syn_III_C)
InterPro	-
eggNOG	-
NR	GeneID:131010528

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057794073.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057794073.1`
3	Nucleus	细胞核	0.00000	`XP_057794073.1`
4	Chromosome	染色体	0.00000	`XP_057794073.1`
5	Centromere	着丝粒	0.00000	`XP_057794073.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:56816577`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,C31
`Chr2:56816600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B111,C31
`Chr2:56816622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B69
`Chr2:56816750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr2:56816942`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B10,B59,B8,C2
`Chr2:56816978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:56816999`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794073.1

515 aa

258

515

FAE1_CUT1_RppA

ACP_syn_III_C

Chal_sti_synt_C

PF08392 FAE1_CUT1_RppA 103-392 aa PF08541 ACP_syn_III_C 409-489 aa PF02797 Chal_sti_synt_C 411-484 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794073.1`	Pfam	`PF08392`	FAE1_CUT1_RppA	Family	103	392	3.3e-147	490.1	FAE1/Type III polyketide synthase-like protein
`XP_057794073.1`	Pfam	`PF08541`	ACP_syn_III_C	Domain	409	489	1e-11	45.5	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
`XP_057794073.1`	Pfam	`PF02797`	Chal_sti_synt_C	Domain	411	484	2.3e-09	38.1	Chalcone and stilbene synthases, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938090.1
TGATAAATGACGATCCGAATTCTTTTCTTTGATAAATATGGAGATAAATTAAAGACGATCCAATTCTCTCCTCTCATATTGAAAAACAGTAGCAAATGTAGCATCTAGACATGTATATATCTATAGTCCATATATATAGGCAAACAGTTCATCCCATCTACTTATAAATTTTACCAGATCAAACTACACATTTACATCAGTTTTCGAGCAACAAAAGAAACCGAAAAAGGGCAAAAAAAAATAGAATTCCTCCCCGCATG...

CDS

1 records

下载 CDS FASTA

LOC131010528
ATGGCCGGAGGGGGAGAGGGCGCCGCGGCAGCGCAAGCGAGCGGCGCCACCGTCGGTGTCCGGATCCACCCGGCGCGGCGGCTGCCGGACTTCCTGCAGAGTGTGAACTTGAAGTACGTGAAGCTGGGCTACCATTACTTGATCTCTCATTTGATAACGCTGTGTCTGGTCCCAATCATGGTCATCATCATCATTGAGGCGTCGCAGATGAATCCCGATGACGTGCGGCAGCTGTGGCTGCATCTGCAATACAATCTCGT...

Protein

1 records

下载 Protein FASTA

XP_057794073.1
MAGGGEGAAAAQASGATVGVRIHPARRLPDFLQSVNLKYVKLGYHYLISHLITLCLVPIMVIIIIEASQMNPDDVRQLWLHLQYNLVSVITCSAFLVFGSTVYIMTRPRPVYLVDYSCYRAPDSLKAPYDRFMKHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHSIPPQPSMQAAREEAEEVMYGALDKLFANTSVKPKEIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIKSFNLGGMGCSAGVIAIDLAKDM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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