当前解析结果
SmilChr02G003576| 统一新 Gene ID | SmilChr02G003576 |
|---|---|
| 名称 | SmilChr02G003576 |
| 描述 | phenylcoumaran benzylic ether reductase TP7-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 56936726 - 56938115 / + |
| NCBI Gene ID | LOC131010539 |
|---|---|
| GeneID | 131010539 |
| locus_tag | - |
| NCBI Name | LOC131010539 |
| 原始查询 | SmilChr02G003576 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phenylcoumaran benzylic ether reductase TP7-like |
| 产物 | phenylcoumaran benzylic ether reductase TP7-like |
| Arabidopsis | AT1G75290 (AT1G75290)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843866] identity=67.1; qcov=0.993; evalue=1.05e-151; confidence=high |
| Rice | Os06g0472200- identity=57.8; qcov=0.99; evalue=4.32e-130; confidence=high |
| GO | GO:0016491 (oxidoreductase activity) |
| KEGG | - |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF03435 (Sacchrp_dh_NADP); PF05368 (NmrA); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010539 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057794082.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057794082.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794082.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794082.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794082.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:56936820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,C75 |
Chr2:56936871 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A21,B45,B63,C71 |
Chr2:56936943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,D10,D4 |
Chr2:56937354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:56937430 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr2:56937794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B25 |
Chr2:56937855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B129,B91 |
Chr2:56937857 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A21,B129,B91 |
Chr2:56937884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B24,B33,B94,C48 |
Chr2:56937890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B33,B94 |
Chr2:56937891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B33,B94 |
Chr2:56937896 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B33,B94 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794082.1PF05368
NmrA 3-302 aa
PF01370
Epimerase 5-83 aa
PF03435
Sacchrp_dh_NADP 5-89 aa
PF16363
GDP_Man_Dehyd 6-76 aa
PF01073
3Beta_HSD 6-91 aa
PF13460
NAD_binding_10 9-148 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794082.1 |
Pfam | PF05368 |
NmrA | Family | 3 | 302 | 3e-94 | 316.7 | NmrA-like family |
XP_057794082.1 |
Pfam | PF01370 |
Epimerase | Family | 5 | 83 | 2.3e-08 | 34.5 | NAD dependent epimerase/dehydratase family |
XP_057794082.1 |
Pfam | PF03435 |
Sacchrp_dh_NADP | Family | 5 | 89 | 4.8e-06 | 27.6 | Saccharopine dehydrogenase NADP binding domain |
XP_057794082.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 6 | 76 | 6.4e-07 | 29.9 | GDP-mannose 4,6 dehydratase |
XP_057794082.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 6 | 91 | 1.1e-06 | 28.6 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057794082.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 9 | 148 | 2.9e-13 | 50.8 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。