当前解析结果
SmilChr02G003597| 统一新 Gene ID | SmilChr02G003597 |
|---|---|
| 名称 | SmilChr02G003597 |
| 描述 | auxilin-like protein 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 57161091 - 57168412 / + |
| NCBI Gene ID | LOC131010557 |
|---|---|
| GeneID | 131010557 |
| locus_tag | - |
| NCBI Name | LOC131010557 |
| 原始查询 | SmilChr02G003597 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | auxilin-like protein 1 |
| 产物 | auxilin-like protein 1 |
| Arabidopsis | AT1G75310 (AUL1)auxin-like 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843868] identity=58.8; qcov=0.201; evalue=8.07e-82; confidence=weak |
| Rice | Os05g0579900 (OsDjC52)- identity=60.8; qcov=0.202; evalue=1.41e-93; confidence=weak |
| GO | GO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010557 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.20000 | XP_057794097.1 |
| 2 | Nucleus membrane | 核膜 | 0.20000 | XP_057794097.1 |
| 3 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057794097.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057794097.1 |
| 5 | Cell membrane | 细胞膜 | 0.20000 | XP_057794097.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:57163373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:57163656 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C7 |
Chr2:57163904 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr2:57164151 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,C36 |
Chr2:57164237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,C75,D1 |
Chr2:57164280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr2:57164320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr2:57164337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B32,B69 |
Chr2:57164436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr2:57164640 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B95 |
Chr2:57165140 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B135,B49,B84,C58 |
Chr2:57165171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B56,B96 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。