Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003597

染色体: Chr02 坐标: 57161091-57168412 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003597
名称SmilChr02G003597
描述auxilin-like protein 1
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向57161091 - 57168412 / +

ID 对照

NCBI Gene IDLOC131010557
GeneID131010557
locus_tag-
NCBI NameLOC131010557
原始查询SmilChr02G003597

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述auxilin-like protein 1
产物auxilin-like protein 1
ArabidopsisAT1G75310 (AUL1)
auxin-like 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:843868]
identity=58.8; qcov=0.201; evalue=8.07e-82; confidence=weak
RiceOs05g0579900 (OsDjC52)
-
identity=60.8; qcov=0.202; evalue=1.41e-93; confidence=weak
GOGO:0005737 (cytoplasm); GO:0030276 (clathrin binding); GO:0031982 (vesicle); GO:0043231 (intracellular membrane-bounded organelle); GO:0072318 (clathrin coat disassembly); GO:0072583 (clathrin-dependent endocytosis)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131010557

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.20000 XP_057794097.1
2 Nucleus membrane 核膜 0.20000 XP_057794097.1
3 Cytoskeleton 细胞骨架 0.20000 XP_057794097.1
4 Cytosol 细胞质基质 0.20000 XP_057794097.1
5 Cell membrane 细胞膜 0.20000 XP_057794097.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:57163373 G A EMS_canonical_SNV CDS_variant 1 C53
Chr2:57163656 G A EMS_canonical_SNV CDS_variant 2 A16,C7
Chr2:57163904 C T EMS_canonical_SNV CDS_variant 1 B95
Chr2:57164151 G A EMS_canonical_SNV CDS_variant 2 A11,C36
Chr2:57164237 G A EMS_canonical_SNV CDS_variant 3 A9,C75,D1
Chr2:57164280 C T EMS_canonical_SNV CDS_variant 1 C57
Chr2:57164320 C T EMS_canonical_SNV CDS_variant 1 D3
Chr2:57164337 G A EMS_canonical_SNV CDS_variant 2 B32,B69
Chr2:57164436 G A EMS_canonical_SNV CDS_variant 1 B67
Chr2:57164640 G A EMS_canonical_SNV CDS_variant 2 B104,B95
Chr2:57165140 C T EMS_canonical_SNV CDS_variant 5 A18,B135,B49,B84,C58
Chr2:57165171 C T EMS_canonical_SNV CDS_variant 3 B101,B56,B96

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057938114.1
GTTTTCTCTCTCCTCCCCTTTCTCCTTCGTTTTGTCTGACTCTGCAGAACTTTTTTCCCTCTTCAGACAACTAAAGCCTGTCTCACCGAACAGGAAGAAGCAAAACCCCCCCCCCCCCAAAATTCCAGAAAAAATCGAGTCAAAAACCCTAGGCGAACACGACCTGCTACAAAGTCCCTATCTCTCTCCATTTTCATGGAATCTCTCTCCAAATCTTCGCACAGGAGAAAGCACTCAACTACGACGGCGAATGTCTTCTC...

CDS

1 records

下载 CDS FASTA
LOC131010557
ATGGAATCTCTCTCCAAATCTTCGCACAGGAGAAAGCACTCAACTACGACGGCGAATGTCTTCTCCTCATCTTTCTCCTTCAAGAACCCCTACGGAGACGTTTTACTGCCGAATGGAGCTGAGAGGAAGTCGCTACAAGTTCACGAGTACTCCGAGATTTTCTCCGGCTCCTCTTCCATTCCAGTGCTTGATCTTTCGGCCATGGACGAGCGGGTCGCCTTGGGCGATCTCCGGAGCTCCAAGCTCGATTACACCAACAT...

Protein

1 records

下载 Protein FASTA
XP_057794097.1
MESLSKSSHRRKHSTTTANVFSSSFSFKNPYGDVLLPNGAERKSLQVHEYSEIFSGSSSIPVLDLSAMDERVALGDLRSSKLDYTNIFSGLTHDDVFVPYEELLNGSAKRAKPRIPMEGRPHRQESGSRHSSRKTQRSPGVASDQSIDRVKLQESGSPPSIVKMERPSGVASDPSFDEGKLQESGSLHPSIKTERPSGVVSEQSTDGSEQQFNLSFNRTNQINVDASDAKTHIAELHAVPGFTHFVDGGRPHKGKNDRPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器