Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003606`

染色体: Chr02 坐标: 57304569-57310444 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003606`
名称	SmilChr02G003606
描述	phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	57304569 - 57310444 / `-`

ID 对照

NCBI Gene ID	`LOC131010568`
GeneID	`131010568`
locus_tag	`-`
NCBI Name	`LOC131010568`
原始查询	`SmilChr02G003606`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like
产物	phosphatidylinositol/phosphatidylcholine transfer protein SFH6-like
Arabidopsis	`AT2G21540` (SFH3) SEC14-like 3 [Source:NCBI gene (formerly Entrezgene);Acc:816693] identity=53.2; qcov=1.01; evalue=5.63e-114; confidence=high
Rice	`Os10g0122600` (OsSNDP1) - identity=57; qcov=0.918; evalue=6.13e-110; confidence=high
GO	-
KEGG	-
Pfam	PF00650 (CRAL_TRIO); PF03765 (CRAL_TRIO_N)
InterPro	-
eggNOG	-
NR	GeneID:131010568

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057794114.1`
2	Cytoplasm	细胞质	0.60000	`XP_057794119.1`
3	Endoplasmic reticulum	内质网	0.40000	`XP_057794122.1`
4	Nucleus	细胞核	0.00000	`XP_057794114.1`
5	Chromosome	染色体	0.00000	`XP_057794114.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:57304978`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:57305010`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr2:57305658`	`TTA`	`T`	2bp_deletion	frameshift_variant	1	B12
`Chr2:57305658`	`TTA`	`T`	2bp_deletion	CDS_variant	1	B12
`Chr2:57305982`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B67,C38
`Chr2:57306370`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B119,B67,C38
`Chr2:57306370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B119,B67,C38
`Chr2:57306758`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr2:57307690`	`TA`	`T`	1bp_deletion	frameshift_variant	1	A18
`Chr2:57307690`	`TA`	`T`	1bp_deletion	CDS_variant	1	A18
`Chr2:57310138`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:57310156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794114.1

392 aa

196

392

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 99-120 aa PF00650 CRAL_TRIO 184-346 aa

XP_057794116.1

392 aa

196

392

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 99-120 aa PF00650 CRAL_TRIO 184-346 aa

XP_057794117.1

389 aa

194

389

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 96-117 aa PF00650 CRAL_TRIO 181-343 aa

XP_057794118.1

361 aa

180

361

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 68-89 aa PF00650 CRAL_TRIO 153-315 aa

XP_057794119.1

356 aa

178

356

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 99-120 aa PF00650 CRAL_TRIO 148-310 aa

XP_057794120.1

356 aa

178

356

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 99-120 aa PF00650 CRAL_TRIO 148-310 aa

XP_057794121.1

322 aa

161

322

CRAL_TRIO_N

CRAL_TRIO

PF03765 CRAL_TRIO_N 29-50 aa PF00650 CRAL_TRIO 114-276 aa

XP_057794122.1

294 aa

147

294

CRAL_TRIO

PF00650 CRAL_TRIO 86-248 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794114.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	99	120	4.9e-06	27.3	CRAL/TRIO, N-terminal domain
`XP_057794114.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	184	346	2.5e-30	106.1	CRAL/TRIO domain
`XP_057794116.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	99	120	4.9e-06	27.3	CRAL/TRIO, N-terminal domain
`XP_057794116.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	184	346	2.5e-30	106.1	CRAL/TRIO domain
`XP_057794117.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	96	117	4.9e-06	27.3	CRAL/TRIO, N-terminal domain
`XP_057794117.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	181	343	2.5e-30	106.0	CRAL/TRIO domain
`XP_057794118.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	68	89	4.8e-06	27.4	CRAL/TRIO, N-terminal domain
`XP_057794118.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	153	315	2.4e-30	106.1	CRAL/TRIO domain
`XP_057794119.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	99	120	4.3e-06	27.5	CRAL/TRIO, N-terminal domain
`XP_057794119.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	148	310	1.9e-30	106.4	CRAL/TRIO domain
`XP_057794120.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	99	120	4.3e-06	27.5	CRAL/TRIO, N-terminal domain
`XP_057794120.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	148	310	1.9e-30	106.4	CRAL/TRIO domain
`XP_057794121.1`	Pfam	`PF03765`	CRAL_TRIO_N	Domain	29	50	4.7e-06	27.4	CRAL/TRIO, N-terminal domain
`XP_057794121.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	114	276	2.2e-30	106.2	CRAL/TRIO domain
`XP_057794122.1`	Pfam	`PF00650`	CRAL_TRIO	Domain	86	248	1.8e-30	106.5	CRAL/TRIO domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XR_009096601.1
AAGTTTGAAATTACTTATTACATTCTTGGCAATTTACCTAAACGCATCAAATTTATCCATCCGTTGGTGCAAGGAAAGGAAAGTAAAGTAGGCGGGGGCAGCATAAAACAGGTAGTAAAATCCAATGCTGCGGCATATTCCCGCCAAATGACGCAGCACCAAACACACTTACCCGCGCCACGTGGCTGGGCCCCGCCTCCTTTCACCACCGCCTCTCAACAAACCCGCTGCGCCATCTATCTTCTCTCGGATTTCGCTCT...

XR_009096600.1
AAGTTTGAAATTACTTATTACATTCTTGGCAATTTACCTAAACGCATCAAATTTATCCATCCGTTGGTGCAAGGAAAGGAAAGTAAAGTAGGCGGGGGCAGCATAAAACAGGTAGTAAAATCCAATGCTGCGGCATATTCCCGCCAAATGACGCAGCACCAAACACACTTACCCGCGCCACGTGGCTGGGCCCCGCCTCCTTTCACCACCGCCTCTCAACAAACCCGCTGCGCCATCTATCTTCTCTCGGATTTCGCTCT...

CDS

8 records

下载 CDS FASTA

LOC131010568
ATGTCCAACACCCTCGATCCCCTCTCTGCCCTCCGTTGCTCTAAGGATGATGAGTACAAACACAAATCAGATCCTGAGAACTTAGAGGAAAATATGAAATCTGGAGTTCTCAGAAAAGCAAAAAATGTATCTAGTAAGTTCAGGAGCTCTCTAAGAAACAAGATCAAGAGGAAAAATGATACTGGCATTTGTAACATTGAAGATATGCATGAAATCCAGGATCACAAGGCTGTCGATGCTTTTCGGCAGGCACTGGTAAT...

Protein

8 records

下载 Protein FASTA

XP_057794114.1
MSNTLDPLSALRCSKDDEYKHKSDPENLEENMKSGVLRKAKNVSSKFRSSLRNKIKRKNDTGICNIEDMHEIQDHKAVDAFRQALVMDSLLPTRFDDYHVMLRFLKARKFNINKAKIMWANMLEWRKNFGADTIMEKNGNLHLAERQNYVLFARLGMDSGTGWLRVFSTCYQDFNFKELNEVQQYYPHGYHGVDKDGRPVYIERLGMIDVDMLLQVTNVDRFVKYQVQEFEKSLAIRFPACSVAANKHIDTSTTILDVQG...

XP_057794116.1
MSNTLDPLSALRCSKDDEYKHKSDPENLEENMKSGVLRKAKNVSSKFRSSLRNKIKRKNDTGICNIEDMHEIQDHKAVDAFRQALVMDSLLPTRFDDYHVMLRFLKARKFNINKAKIMWANMLEWRKNFGADTIMEKNGNLHLAERQNYVLFARLGMDSGTGWLRVFSTCYQDFNFKELNEVQQYYPHGYHGVDKDGRPVYIERLGMIDVDMLLQVTNVDRFVKYQVQEFEKSLAIRFPACSVAANKHIDTSTTILDVQG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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