Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003624`

染色体: Chr02 坐标: 57557305-57575394 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003624`
名称	SmilChr02G003624
描述	chaperone protein dnaJ 1, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	57557305 - 57575394 / `+`

ID 对照

NCBI Gene ID	`LOC131010580`
GeneID	`131010580`
locus_tag	`-`
NCBI Name	`LOC131010580`
原始查询	`SmilChr02G003624`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	chaperone protein dnaJ 1, mitochondrial
产物	chaperone protein dnaJ 1%2C mitochondrial
Arabidopsis	`AT1G28210` (ATJ1) DNAJ heat shock family protein [Source:NCBI gene (formerly Entrezgene);Acc:839715] identity=62.7; qcov=0.845; evalue=2.13e-169; confidence=high
Rice	`Os12g0168400` (OsDjA11) - identity=39.9; qcov=0.903; evalue=2.64e-95; confidence=medium
GO	GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0009408 (response to heat); GO:0031072 (heat shock protein binding); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085)
KEGG	-
Pfam	PF00226 (DnaJ); PF00684 (DnaJ_CXXCXGXG); PF01556 (DnaJ_C)
InterPro	-
eggNOG	-
NR	GeneID:131010580

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057794145.1`
2	Mitochondrion matrix	线粒体基质	0.80000	`XP_057794147.1`
3	Mitochondrion membrane	线粒体膜	0.20000	`XP_057794145.1`
4	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057794145.1`
5	Nucleus	细胞核	0.00000	`XP_057794147.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:57557576`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr2:57557594`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B35,B95,C14
`Chr2:57557840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B119,B55,C38
`Chr2:57558908`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B35,B95,C14
`Chr2:57560762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B125,B52
`Chr2:57572687`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:57573422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:57573437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C48,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794145.1

477 aa

238

477

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 88-150 aa PF01556 DnaJ_C 205-415 aa PF00684 DnaJ_CXXCXGXG 232-288 aa

XP_057794146.1

470 aa

235

470

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 81-143 aa PF01556 DnaJ_C 198-408 aa PF00684 DnaJ_CXXCXGXG 225-281 aa

XP_057794147.1

454 aa

227

454

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 88-150 aa PF01556 DnaJ_C 205-415 aa PF00684 DnaJ_CXXCXGXG 232-288 aa

XP_057794148.1

453 aa

226

453

DnaJ

DnaJ_C

DnaJ_CXXCXGXG

PF00226 DnaJ 88-150 aa PF01556 DnaJ_C 205-415 aa PF00684 DnaJ_CXXCXGXG 232-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794145.1`	Pfam	`PF00226`	DnaJ	Domain	88	150	2.2e-26	92.4	DnaJ domain
`XP_057794145.1`	Pfam	`PF01556`	DnaJ_C	Domain	205	415	4.6e-42	144.4	DnaJ C terminal domain
`XP_057794145.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	232	288	2.4e-08	34.9	DnaJ central domain
`XP_057794146.1`	Pfam	`PF00226`	DnaJ	Domain	81	143	2.2e-26	92.5	DnaJ domain
`XP_057794146.1`	Pfam	`PF01556`	DnaJ_C	Domain	198	408	4.4e-42	144.4	DnaJ C terminal domain
`XP_057794146.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	225	281	3.1e-08	34.5	DnaJ central domain
`XP_057794147.1`	Pfam	`PF00226`	DnaJ	Domain	88	150	2e-26	92.6	DnaJ domain
`XP_057794147.1`	Pfam	`PF01556`	DnaJ_C	Domain	205	415	4e-42	144.5	DnaJ C terminal domain
`XP_057794147.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	232	288	2.1e-08	35.0	DnaJ central domain
`XP_057794148.1`	Pfam	`PF00226`	DnaJ	Domain	88	150	2e-26	92.6	DnaJ domain
`XP_057794148.1`	Pfam	`PF01556`	DnaJ_C	Domain	205	415	4e-42	144.5	DnaJ C terminal domain
`XP_057794148.1`	Pfam	`PF00684`	DnaJ_CXXCXGXG	Domain	232	288	2.1e-08	35.0	DnaJ central domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

10 records

下载 cDNA FASTA

XR_009096606.1
CATTCGTTTATCACCCACAAGAATTTGCGTCCATTTCCAAAGGGTTTAAGACAACAGCTCATAAACCCCTCTCTTATTTCCCCCTCCATTTTGCTGCATAGCCTAAGAATGCGTCGATGGCTCGCGTCTTCGCCCAAATCACTAGCCGATAAACTATTGAAAATTTGTGCTCAATCCTCCGATGGAGTCTTATGTGGGAAAATTCCCCACTTTCAACGGGCATTCATTTGTTCTCCATGTCGACGGCATCATTCATCAGC...

XR_009096607.1
CATTCGTTTATCACCCACAAGAATTTGCGTCCATTTCCAAAGGGTTTAAGACAACAGCTCATAAACCCCTCTCTTATTTCCCCCTCCATTTTGCTGCATAGCCTAAGAATGCGTCGATGGCTCGCGTCTTCGCCCAAATCACTAGCCGATAAACTATTGAAAATTTGTGCTCAATCCTCCGATGGAGTCTTATGTGGGAAAATTCCCCACTTTCAACGGGCATTCATTTGTTCTCCATGTCGACGGCATCATTCATCAGC...

CDS

4 records

下载 CDS FASTA

LOC131010580
ATGCGTCGATGGCTCGCGTCTTCGCCCAAATCACTAGCCGATAAACTATTGAAAATTTGTGCTCAATCCTCCGATGGAGTCTTATGTGGGAAAATTCCCCACTTTCAACGGGCATTCATTTGTTCTCCATGTCGACGGCATCATTCATCAGCTGCATATCAGTACGGTTATAGGGAATGGCATGCCGGTTTTGCACATAATGAAATGCTGTTTTCGAGGCGTTTCATCCACGGCACAGGGTCTTATCAATCCGCGGCACG...

LOC131010580
ATGCGTCGATGGCTCGCGTCTTCGCCCAAATCACTAGCCGATAAACTATTGAAAATTTGTGCTCAATCCTCCGATGGAGTCTTATGTGGGAAAATTCCCCACTTTCAACGGGCATTCATTTGTTCTCCATCTGCATATCAGTACGGTTATAGGGAATGGCATGCCGGTTTTGCACATAATGAAATGCTGTTTTCGAGGCGTTTCATCCACGGCACAGGGTCTTATCAATCCGCGGCACGTGATTACTATGAGATTCTTGG...

Protein

4 records

下载 Protein FASTA

XP_057794145.1
MRRWLASSPKSLADKLLKICAQSSDGVLCGKIPHFQRAFICSPCRRHHSSAAYQYGYREWHAGFAHNEMLFSRRFIHGTGSYQSAARDYYEILGVSRDATRDEIKKAFHALAKKYHPDANKNNPSAKRKFQEIREAYETLKDPEKKTHYDRLRQSSKTNGTRSAGNSNTGSSRFRHAHGAQFSDSFHKIFSEIFENETENVGSDIQVELVLTFSEAAQGCTKDLSFDADVPCDSCHGRGHPFDAQTIMCPTCRGIGRVTI...

XP_057794146.1
MRRWLASSPKSLADKLLKICAQSSDGVLCGKIPHFQRAFICSPSAYQYGYREWHAGFAHNEMLFSRRFIHGTGSYQSAARDYYEILGVSRDATRDEIKKAFHALAKKYHPDANKNNPSAKRKFQEIREAYETLKDPEKKTHYDRLRQSSKTNGTRSAGNSNTGSSRFRHAHGAQFSDSFHKIFSEIFENETENVGSDIQVELVLTFSEAAQGCTKDLSFDADVPCDSCHGRGHPFDAQTIMCPTCRGIGRVTIPPFTTTC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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