当前解析结果
SmilChr02G003635| 统一新 Gene ID | SmilChr02G003635 |
|---|---|
| 名称 | SmilChr02G003635 |
| 描述 | secreted RxLR effector protein 161-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 57700102 - 57700797 / + |
| NCBI Gene ID | LOC131009796 |
|---|---|
| GeneID | 131009796 |
| locus_tag | - |
| NCBI Name | LOC131009796 |
| 原始查询 | SmilChr02G003635 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | secreted RxLR effector protein 161-like |
| 产物 | secreted RxLR effector protein 161-like |
| Arabidopsis | AT4G23160 (CRK8)cysteine-rich RECEPTOR-like kinase [Source:NCBI gene (formerly Entrezgene);Acc:828415] identity=34.6; qcov=0.775; evalue=1.08e-24; confidence=low |
| Rice | Os08g0125300- identity=37.7; qcov=0.965; evalue=1.16e-37; confidence=medium |
| GO | GO:0003676 (nucleic acid binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009796 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057793186.1 |
| 2 | Nucleus | 细胞核 | 0.20000 | XP_057793186.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793186.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793186.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793186.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:57700114 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B120,B124,B53,B98,C45 |
Chr2:57700213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B125,B136 |
Chr2:57700217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B120,C77 |
Chr2:57700235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:57700265 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:57700297 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | A4 |
Chr2:57700297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr2:57700299 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C12,C43,C47 |
Chr2:57700400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A20,C18,C49 |
Chr2:57700423 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B122,B35,B94,B95,C14 |
Chr2:57700423 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B122,B35,B94,B95,C14 |
Chr2:57700455 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。