Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003651`

染色体: Chr02 坐标: 57887944-57907095 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003651`
名称	SmilChr02G003651
描述	probable rhamnogalacturonate lyase B
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	57887944 - 57907095 / `-`

ID 对照

NCBI Gene ID	`LOC131010608`
GeneID	`131010608`
locus_tag	`-`
NCBI Name	`LOC131010608`
原始查询	`SmilChr02G003651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable rhamnogalacturonate lyase B
产物	probable rhamnogalacturonate lyase B
Arabidopsis	`AT1G09890` (AT1G09890) Rhamnogalacturonate lyase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837521] identity=64.8; qcov=0.935; evalue=0; confidence=high
Rice	`Os08g0554100` - identity=60.4; qcov=0.97; evalue=0; confidence=high
GO	GO:0030246 (carbohydrate binding)
KEGG	-
Pfam	PF06045 (Rhamnogal_lyase); PF14683 (CBM-like); PF14686 (fn3_3)
InterPro	-
eggNOG	-
NR	GeneID:131010608

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057794196.1`
2	Cytoplasm	细胞质	0.40000	`XP_057794195.1`
3	Cytosol	细胞质基质	0.20000	`XP_057794195.1`
4	Nucleus	细胞核	0.00000	`XP_057794196.1`
5	Chromosome	染色体	0.00000	`XP_057794196.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:57888183`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:57888220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C5
`Chr2:57888569`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:57888587`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:57888606`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,C38
`Chr2:57888650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B56,B96,C83,C85
`Chr2:57888919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B70,C87
`Chr2:57888947`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,C24
`Chr2:57889202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:57889390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96
`Chr2:57889394`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr2:57889488`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794195.1

640 aa

320

640

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 5-204 aa PF14686 fn3_3 360-430 aa PF14683 CBM-like 444-632 aa

XP_057794196.1

666 aa

333

666

Rhamnogal_lyase

fn3_3

CBM-like

PF06045 Rhamnogal_lyase 25-230 aa PF14686 fn3_3 386-456 aa PF14683 CBM-like 470-658 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794195.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	5	204	6.4e-83	278.0	Rhamnogalacturonate lyase family
`XP_057794195.1`	Pfam	`PF14686`	fn3_3	Domain	360	430	3.1e-24	85.2	Polysaccharide lyase family 4, domain II
`XP_057794195.1`	Pfam	`PF14683`	CBM-like	Domain	444	632	3.2e-50	170.9	Polysaccharide lyase family 4, domain III
`XP_057794196.1`	Pfam	`PF06045`	Rhamnogal_lyase	Family	25	230	8.7e-83	277.6	Rhamnogalacturonate lyase family
`XP_057794196.1`	Pfam	`PF14686`	fn3_3	Domain	386	456	3.4e-24	85.1	Polysaccharide lyase family 4, domain II
`XP_057794196.1`	Pfam	`PF14683`	CBM-like	Domain	470	658	3.5e-50	170.7	Polysaccharide lyase family 4, domain III

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938212.1
AAGGTTTGTGTCATTCCCTCATTTTTCCCTTCTCTTTTCATTAATCCAGGTTGGAGAAAATGTCTGGAATTAGGATTCTGCAGTTACACATTCACACGGATAATGTAGTAATTGACAACGGATTGGTGCAGCTTAGTCTGTCTAATCCGGGGGGGCTGATAAGGGGCATACAGTACAATGGAATTGACAATTTGCTGGAACTTCATAACCAAGACCTCAATGGCGGGTTTTATGATCTCAATTGGAGTGAAGAAGGGGCC...

XM_057938213.1
ACGTAATCCATTAATTTAGAGGGAAAAGAGAAGTTATTCAAAAGTGATTACATTTTTTTTTTACTTAAAAGTGTGAGGCAGAGGGCGACGCAACGATCCGTTGTTTTATCTCAACCTGACTCAATAAAGTAGTAGACTGGATTGGAGCAGAGGATTCCTTTTTCTCCAAACAGTTGATGGATGCAATGCGCTGCTGCTTATAACAACATAAGCTGCTGCTTTTTTTTTTTTTTTTTTTTTTGCAATAAGCATGCAAAAGC...

CDS

2 records

下载 CDS FASTA

LOC131010608
ATGTCTGGAATTAGGATTCTGCAGTTACACATTCACACGGATAATGTAGTAATTGACAACGGATTGGTGCAGCTTAGTCTGTCTAATCCGGGGGGGCTGATAAGGGGCATACAGTACAATGGAATTGACAATTTGCTGGAACTTCATAACCAAGACCTCAATGGCGGGTTTTATGATCTCAATTGGAGTGAAGAAGGGGCCTCCAAAACAAGGGGAAAGTTCGACACGATTGAAGGAACAAACTTCAGTGTCATCGTAGA...

LOC131010608
ATGCAATGCGCTGCTGCTTATAACAACATAAGCTGCTGCTTTTTTTTTTTTTTTTTTTTTTGCAATAAGCATGCAAAAGCCAATATGGCGACTCCCATTGTGACGACAAAACTGGAAGATTTGGTAGTAATTGACAACGGATTGGTGCAGCTTAGTCTGTCTAATCCGGGGGGGCTGATAAGGGGCATACAGTACAATGGAATTGACAATTTGCTGGAACTTCATAACCAAGACCTCAATGGCGGGTTTTATGATCTCAA...

Protein

2 records

下载 Protein FASTA

XP_057794195.1
MSGIRILQLHIHTDNVVIDNGLVQLSLSNPGGLIRGIQYNGIDNLLELHNQDLNGGFYDLNWSEEGASKTRGKFDTIEGTNFSVIVENEELVEVSFTRSWDPSVEGKQSPLSIDRRFVMLRDHPGFYSYAIFEHTEEYPGFNLNTARIAFMLRKDKFHYMAVADNRQRYMPLPDDRLPGRGQELAYPEAVLLVDPVEPEFKGEVDDKYQYTLENKDNKVHGWICFDPPIGFWQISPSNEFRNGGPFKQDLTSHVNPTTLA...

XP_057794196.1
MQCAAAYNNISCCFFFFFFFCNKHAKANMATPIVTTKLEDLVVIDNGLVQLSLSNPGGLIRGIQYNGIDNLLELHNQDLNGGFYDLNWSEEGASKTRGKFDTIEGTNFSVIVENEELVEVSFTRSWDPSVEGKQSPLSIDRRFVMLRDHPGFYSYAIFEHTEEYPGFNLNTARIAFMLRKDKFHYMAVADNRQRYMPLPDDRLPGRGQELAYPEAVLLVDPVEPEFKGEVDDKYQYTLENKDNKVHGWICFDPPIGFWQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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