当前解析结果
SmilChr02G003658| 统一新 Gene ID | SmilChr02G003658 |
|---|---|
| 名称 | SmilChr02G003658 |
| 描述 | uncharacterized SmilChr02G003658 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 57955652 - 57957267 / - |
| NCBI Gene ID | LOC131010614 |
|---|---|
| GeneID | 131010614 |
| locus_tag | - |
| NCBI Name | LOC131010614 |
| 原始查询 | SmilChr02G003658 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684]; symbol=AT5G07900; hit=AT5G07900; species=arabidopsis; confidence=low |
| 产物 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684]; symbol=AT5G07900; hit=AT5G07900; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G07900 (AT5G07900)Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830684] identity=29.1; qcov=0.82; evalue=2.63e-40; confidence=low |
| Rice | Os06g0224500- identity=26.4; qcov=0.883; evalue=7.2e-32; confidence=low |
| GO | GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | - |
| Pfam | PF02536 (mTERF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010614 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057794208.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794208.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794208.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794208.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794208.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:57955977 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B103,D7 |
Chr2:57956240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr2:57956247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,B15,B76 |
Chr2:57956307 |
GA |
G |
1bp_deletion | frameshift_variant | 26 | A22,A25,B108,B112,B114,B138,B14,B140,B23,B37,B41,B50,B67,B81,B9,C1,C18,C23,C40,C41,C54,C56,C65,C76,C85,D8 |
Chr2:57956593 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C87 |
Chr2:57956621 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B17 |
Chr2:57956677 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | A24 |
Chr2:57956677 |
CT |
C |
1bp_deletion | CDS_variant | 1 | A24 |
Chr2:57956680 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr2:57956712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B24,B33,C48 |
Chr2:57956741 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:57956763 |
G |
GCA |
2bp_insertion | frameshift_variant | 21 | A11,A15,A23,A5,A7,B131,B139,B20,B35,B37,B55,B65,B66,B70,B74,B93,C22,C72,C79,C87,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794208.1PF02536
mTERF 70-226 aa
PF02536
mTERF 185-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794208.1 |
Pfam | PF02536 |
mTERF | Family | 70 | 226 | 1.8e-38 | 133.0 | mTERF |
XP_057794208.1 |
Pfam | PF02536 |
mTERF | Family | 185 | 355 | 1.8e-38 | 133.0 | mTERF |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。