当前解析结果
SmilChr02G003660| 统一新 Gene ID | SmilChr02G003660 |
|---|---|
| 名称 | SmilChr02G003660 |
| 描述 | membrane-associated progesterone-binding protein 4 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 57982041 - 57986330 / - |
| NCBI Gene ID | LOC131010616 |
|---|---|
| GeneID | 131010616 |
| locus_tag | - |
| NCBI Name | LOC131010616 |
| 原始查询 | SmilChr02G003660 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | membrane-associated progesterone-binding protein 4 |
| 产物 | membrane-associated progesterone-binding protein 4 |
| Arabidopsis | AT4G14965 (MAPR4)membrane-associated progesterone binding protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:827155] identity=78.3; qcov=0.741; evalue=2.61e-89; confidence=high |
| Rice | Os03g0205500- identity=73.2; qcov=0.741; evalue=1.19e-84; confidence=high |
| GO | GO:0012505 (endomembrane system); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF00173 (Cyt-b5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010616 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057794209.1 |
| 2 | Endoplasmic reticulum lumen | 内质网腔 | 0.80000 | XP_057794209.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057794213.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057794211.1 |
| 5 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057794213.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:57982370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A4,B120,B77,B85 |
Chr2:57982371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C71 |
Chr2:57982404 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:57982472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,C29,C6,C8 |
Chr2:57982778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:57982800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B80 |
Chr2:57985224 |
C |
T |
EMS_canonical_SNV | stop_gained | 194 | A13,A14,A15,A16,A18,A20,A21,A23,A24,A25,A6,A7,A8,A9,B100,B101,B103,B105,B106,B107,B11,B111,B113,B114,B115,B117,B118,B119,B12,B121,B122,B123,B124,B125,B126,B127,B128,B129,B13,B131,B132,B133,B134,B137,B139,B14,B15,B17,B19,B2,B21,B22,B23,B25,B27,B28,B29,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B42,B43,B44,B45,B47,B48,B5,B50,B51,B52,B53,B54,B55,B57,B59,B6,B60,B61,B62,B66,B68,B69,B70,B71,B72,B73,B74,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B85,B86,B87,B88,B89,B9,B90,B92,B93,B94,B97,B98,B99,C10,C11,C13,C14,C15,C16,C17,C18,C19,C2,C21,C22,C23,C25,C26,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C39,C40,C42,C43,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C57,C59,C6,C60,C61,C63,C64,C66,C67,C68,C69,C7,C71,C72,C73,C75,C76,C78,C79,C8,C80,C81,C82,C84,C85,C86,C87,C9,D10,D11,D2,D3,D5,D7,D9 |
Chr2:57985235 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
Chr2:57985278 |
T |
TC |
1bp_insertion | frameshift_variant | 26 | A2,A3,A5,B1,B104,B122,B24,B33,B41,B63,B71,B82,B83,B91,B98,C12,C22,C43,C47,C48,C62,C74,C77,C83,C87,D2 |
Chr2:57985302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B35,D6 |
Chr2:57986141 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,B120,B77,B85 |
Chr2:57986150 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794209.1PF00173
Cyt-b5 40-100 aa
XP_057794210.1PF00173
Cyt-b5 40-100 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794209.1 |
Pfam | PF00173 |
Cyt-b5 | Domain | 40 | 100 | 9.7e-08 | 32.7 | Cytochrome b5-like Heme/Steroid binding domain |
XP_057794210.1 |
Pfam | PF00173 |
Cyt-b5 | Domain | 40 | 100 | 9.7e-08 | 32.7 | Cytochrome b5-like Heme/Steroid binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。