当前解析结果
SmilChr02G003666| 统一新 Gene ID | SmilChr02G003666 |
|---|---|
| 名称 | SmilChr02G003666 |
| 描述 | pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58053964 - 58056539 / + |
| NCBI Gene ID | LOC131010622 |
|---|---|
| GeneID | 131010622 |
| locus_tag | - |
| NCBI Name | LOC131010622 |
| 原始查询 | SmilChr02G003666 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At3g24000%2C mitochondrial-like |
| Arabidopsis | AT2G22070 (AT2G22070)pentatricopeptide (PPR) repeat-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:816742] identity=33.1; qcov=1.04; evalue=1.05e-145; confidence=low |
| Rice | Os11g0482400- identity=52.3; qcov=0.945; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF17177 (PPR_long); PF20431 (E_motif); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010622 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.80000 | XP_057794219.1 |
| 2 | Chloroplast | 叶绿体 | 0.40000 | XP_057794219.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794219.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794219.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794219.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58054481 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:58054579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr2:58054622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B140,B88 |
Chr2:58054895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B17,C55 |
Chr2:58054918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,C78 |
Chr2:58054979 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:58055077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C87 |
Chr2:58055142 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,C22 |
Chr2:58055307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr2:58055311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B17,C44 |
Chr2:58055395 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B11,C55 |
Chr2:58055515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794219.1PF13041
PPR_2 128-174 aa
PF13812
PPR_3 128-174 aa
PF01535
PPR 130-159 aa
PF01535
PPR 231-257 aa
PF01535
PPR 304-326 aa
PF17177
PPR_long 360-506 aa
PF13041
PPR_2 443-489 aa
PF01535
PPR 444-474 aa
PF13812
PPR_3 444-488 aa
PF23276
TPR_24 446-534 aa
PF01535
PPR 480-506 aa
PF01535
PPR 516-539 aa
PF20431
E_motif 562-620 aa
PF01535
PPR 582-609 aa
PF14432
DYW_deaminase 656-748 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794219.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 128 | 174 | 8.6e-57 | 189.8 | PPR repeat family |
XP_057794219.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 128 | 174 | 2.2e-29 | 102.0 | Pentatricopeptide repeat domain |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 130 | 159 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 231 | 257 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 304 | 326 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF17177 |
PPR_long | Repeat | 360 | 506 | 7.8e-17 | 62.1 | Pentacotripeptide-repeat region of PRORP |
XP_057794219.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 443 | 489 | 8.6e-57 | 189.8 | PPR repeat family |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 444 | 474 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 444 | 488 | 2.2e-29 | 102.0 | Pentatricopeptide repeat domain |
XP_057794219.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 446 | 534 | 8.8e-15 | 55.5 | Pentatricopeptide repeat-containing protein |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 480 | 506 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 516 | 539 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF20431 |
E_motif | Repeat | 562 | 620 | 7.9e-15 | 55.6 | E motif |
XP_057794219.1 |
Pfam | PF01535 |
PPR | Repeat | 582 | 609 | 4.8e-48 | 158.8 | PPR repeat |
XP_057794219.1 |
Pfam | PF14432 |
DYW_deaminase | Domain | 656 | 748 | 3.8e-27 | 94.6 | DYW family of nucleic acid deaminases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。