Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003667`

染色体: Chr02 坐标: 58058977-58066952 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003667`
名称	SmilChr02G003667
描述	uncharacterized SmilChr02G003667
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58058977 - 58066952 / `+`

ID 对照

NCBI Gene ID	`LOC131010624`
GeneID	`131010624`
locus_tag	`-`
NCBI Name	`LOC131010624`
原始查询	`SmilChr02G003667`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	oxidoreductase, zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822497]; symbol=AT3G28670; hit=AT3G28670; species=arabidopsis; confidence=high
产物	oxidoreductase, zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822497]; symbol=AT3G28670; hit=AT3G28670; species=arabidopsis; confidence=high
Arabidopsis	`AT3G28670` (AT3G28670) oxidoreductase, zinc-binding dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:822497] identity=50; qcov=1.01; evalue=7.55e-161; confidence=high
Rice	`Os08g0101400` - identity=43.9; qcov=0.992; evalue=1.1e-119; confidence=medium
GO	GO:0008104 (intracellular protein localization); GO:0012505 (endomembrane system)
KEGG	-
Pfam	PF14778 (ODR4-like)
InterPro	-
eggNOG	-
NR	GeneID:131010624

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057794220.1`
2	Cytosol	细胞质基质	0.80000	`XP_057794220.1`
3	Cytoplasm	细胞质	0.60000	`XP_057794220.1`
4	Nucleoplasm	核质	0.40000	`XP_057794220.1`
5	Chromosome	染色体	0.00000	`XP_057794220.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58059218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58059385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B120,B77,B85
`Chr2:58059483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B131,B132,B9,C67
`Chr2:58061167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:58063305`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:58064095`	`GTT`	`G`	2bp_deletion	frameshift_variant	5	B124,B136,B20,B27,C25
`Chr2:58064095`	`GTT`	`G`	2bp_deletion	CDS_variant	5	B124,B136,B20,B27,C25
`Chr2:58064098`	`C`	`CA`	1bp_insertion	frameshift_variant	5	B124,B136,B20,B27,C25
`Chr2:58064098`	`C`	`CA`	1bp_insertion	CDS_variant	5	B124,B136,B20,B27,C25
`Chr2:58064100`	`T`	`TA`	1bp_insertion	frameshift_variant	5	B124,B136,B20,B27,C25
`Chr2:58064100`	`T`	`TA`	1bp_insertion	CDS_variant	5	B124,B136,B20,B27,C25
`Chr2:58065251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794220.1

489 aa

244

489

ODR4-like

PF14778 ODR4-like 29-414 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794220.1`	Pfam	`PF14778`	ODR4-like	Family	29	414	1.6e-95	320.9	Odorant response abnormal 4-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938237.1
AATAAAGAAAAAAAAATGAAAAATGCTCCAATAATAAAGTGAAAAAAGAATGAAAAAAGAGGAGGAAGAAGAAGAATTAGTTAGTACGGCTCAGACAGTGAATAATAGTTAGAGGGAGCGTTTCAACTCAAATCTGACAAACCTTCCCTTCACAGATCACGCTCAGCGTTTTAGTTCACAAATCATGGTGAAATCCGTCATCGGAGATGAAAATCAACTCAAATTGATCGAAGATCGCCTCGCTCGCTCCGCCGTCCCGT...

CDS

1 records

下载 CDS FASTA

LOC131010624
ATGGTGAAATCCGTCATCGGAGATGAAAATCAACTCAAATTGATCGAAGATCGCCTCGCTCGCTCCGCCGTCCCGTCTCAGATTGGGCTTGTGATTGGGAAACTAAATTCGAAGCTGGACAGAGGATTCGTGTACGATTTGGTGCCCACGCCACCTAATGATGCCGGAGAGCAGCCATGTTGGGTTATTGACGGCGCGGGAGATAGAAGCAAAAGTAAAAAGAAGGGTTCGTCCAAAGCCAAGTCTCAGTCTGAGTCTTC...

Protein

1 records

下载 Protein FASTA

XP_057794220.1
MVKSVIGDENQLKLIEDRLARSAVPSQIGLVIGKLNSKLDRGFVYDLVPTPPNDAGEQPCWVIDGAGDRSKSKKKGSSKAKSQSESSALFIDHDWIFEHARQVSRMLLGGMRVVGVYIWVSESLFKNSTITLCQSVIGVAQAASTMMDDLNERLLLHISYSPLRWTCRNCSLAANISSSSLWPCDFKTGKILGSLQTFRCMYNFDLRLPIPHDDGSDIKIFSDALRNEVMVCAKELKGVKALIDGKLVAGDDLSLTDDFH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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