Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003668`

染色体: Chr02 坐标: 58067179-58072112 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003668`
名称	SmilChr02G003668
描述	phosphoglycerate mutase-like protein 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58067179 - 58072112 / `-`

ID 对照

NCBI Gene ID	`LOC131010625`
GeneID	`131010625`
locus_tag	`-`
NCBI Name	`LOC131010625`
原始查询	`SmilChr02G003668`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoglycerate mutase-like protein 1
产物	phosphoglycerate mutase-like protein 1
Arabidopsis	`AT5G64460` (AT5G64460) Phosphoglycerate mutase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836567] identity=66.9; qcov=0.993; evalue=3.7e-138; confidence=high
Rice	`Os04g0102500` (OSJNBa0068L06.8) - identity=69.5; qcov=0.96; evalue=2.47e-140; confidence=high
GO	GO:0005737 (cytoplasm); GO:0016791 (phosphatase activity)
KEGG	-
Pfam	PF00300 (His_Phos_1)
InterPro	-
eggNOG	-
NR	GeneID:131010625

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794221.1`
2	Cytosol	细胞质基质	1.00000	`XP_057794222.1`
3	Nucleus	细胞核	0.80000	`XP_057794222.1`
4	Chloroplast stroma	叶绿体基质	0.60000	`XP_057794221.1`
5	Cytoplasm	细胞质	0.60000	`XP_057794222.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58067474`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,C22
`Chr2:58068137`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,B6,C67
`Chr2:58068341`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	B110,B114,B63,B76,B8,B97,C1,C19,C40
`Chr2:58068505`	`CG`	`C`	1bp_deletion	frameshift_variant	65	A11,A16,A22,A7,B1,B100,B103,B109,B114,B15,B20,B23,B28,B29,B31,B35,B38,B44,B47,B50,B53,B57,B63,B66,B67,B69,B71,B76,B79,B91,B93,B94,B95,B97,C1,C10,C14,C17,C18,C19,C2,C26,C28,C40,C41,C43,C44,C57,C6,C64,C66,C7,C70,C71,C72,C74,C78,C8,C83,C86,C9,D10,D2,D3,D6
`Chr2:58070333`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:58070535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794221.1

344 aa

172

344

His_Phos_1

PF00300 His_Phos_1 85-157 aa

XP_057794222.1

283 aa

142

283

His_Phos_1

PF00300 His_Phos_1 24-96 aa

XP_057794224.1

283 aa

142

283

His_Phos_1

PF00300 His_Phos_1 24-96 aa

XP_057794225.1

277 aa

138

277

His_Phos_1

PF00300 His_Phos_1 18-90 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794221.1`	Pfam	`PF00300`	His_Phos_1	Domain	85	157	4.6e-09	37.0	Histidine phosphatase superfamily (branch 1)
`XP_057794222.1`	Pfam	`PF00300`	His_Phos_1	Domain	24	96	2.4e-09	37.9	Histidine phosphatase superfamily (branch 1)
`XP_057794224.1`	Pfam	`PF00300`	His_Phos_1	Domain	24	96	2.4e-09	37.9	Histidine phosphatase superfamily (branch 1)
`XP_057794225.1`	Pfam	`PF00300`	His_Phos_1	Domain	18	90	2.2e-09	38.0	Histidine phosphatase superfamily (branch 1)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057938238.1
AGAGAAGAGAAGAGAGAGAAAGCAAGTAACCGACGTCGAAGTAACTAACGTCTGATTTAATAAAAAAACAAACAAGTCGAAACTCGGAGCAGACATTAATGACTACCTCCGCCTCCGCAGCTACAATTGGATACCCTTTTCCTTCTTATTCTCCCACAAATATAAATACTACCCTCAATTTCACCATTTCTCCCTTTCCTTCCCACTACACAAACACAATACCAAACAAACATCGCTACCGACGTTGCTCCTCATCATCC...

XM_057938239.1
ATAAATACTACCCTCAATTTCACCATTTCTCCCTTTCCTTCCCACTACACAAACACAATACCAAACAAACATCGCTACCGACGTTGCTCCTCATCATCCTTCGTCTTTACACTTCTCGCTTCATCCTCTCTCTCCGAGCAGGAAGAAGCATGGTCGTGATTAGCATTATTTGAGTTGACGATGAAATTATGAGATTCGTATATTATTCTTCTATCGCCAAAAGTATCGAGAGATTCGTAGATAAGAACATTAGGAAAAAT...

CDS

4 records

下载 CDS FASTA

LOC131010625
ATGACTACCTCCGCCTCCGCAGCTACAATTGGATACCCTTTTCCTTCTTATTCTCCCACAAATATAAATACTACCCTCAATTTCACCATTTCTCCCTTTCCTTCCCACTACACAAACACAATACCAAACAAACATCGCTACCGACGTTGCTCCTCATCATCCTTCGTCTTTACACTTCTCGCTTCATCCTCTCTCTCCGATATGGATGCTGTAAAAGGCCAAGGCTTGTACCCTTTGCACCGTTGCAAGACTATTCACTT...

LOC131010625
ATGTGGGAATATGTTGATATGGATGCTGTAAAAGGCCAAGGCTTGTACCCTTTGCACCGTTGCAAGACTATTCACTTGGTGAGACATGCCCAGGGATTCCACAATGTTGCTGGAGAAAAGGACCACAGTGCATACATGTCACCAGAGCTTTTTGATGCAGCACTAACCCCTCTTGGCTGGCAACAGGTAGACAATCTGCGGAAGCATGTTCATTCCTTAGGTCTTTCAAAGAGGATTGAATTAGTAGTTGTATCTCCGTT...

Protein

4 records

下载 Protein FASTA

XP_057794221.1
MTTSASAATIGYPFPSYSPTNINTTLNFTISPFPSHYTNTIPNKHRYRRCSSSSFVFTLLASSSLSDMDAVKGQGLYPLHRCKTIHLVRHAQGFHNVAGEKDHSAYMSPELFDAALTPLGWQQVDNLRKHVHSLGLSKRIELVVVSPLLRTMQTAVGVFGGGGFDDGINVAPLMTEHAGKSGRPAISSLNAPPFMAMELCREHLGVHWCDKRRSVTEYKPLFPAIDFSLIETDEDTLWTLDVREANEALAERGQKFLNWL...

XP_057794222.1
MWEYVDMDAVKGQGLYPLHRCKTIHLVRHAQGFHNVAGEKDHSAYMSPELFDAALTPLGWQQVDNLRKHVHSLGLSKRIELVVVSPLLRTMQTAVGVFGGGGFDDGINVAPLMTEHAGKSGRPAISSLNAPPFMAMELCREHLGVHWCDKRRSVTEYKPLFPAIDFSLIETDEDTLWTLDVREANEALAERGQKFLNWLWTREESEIAIVTHSGFLIHTLSAFGDDCQPLVKEEICKPFNNCELRSMVFVDRSMVASSSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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