当前解析结果
SmilChr02G003683| 统一新 Gene ID | SmilChr02G003683 |
|---|---|
| 名称 | SmilChr02G003683 |
| 描述 | inositol-tetrakisphosphate 1-kinase 3-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58188716 - 58193887 / - |
| NCBI Gene ID | LOC131010636 |
|---|---|
| GeneID | 131010636 |
| locus_tag | - |
| NCBI Name | LOC131010636 |
| 原始查询 | SmilChr02G003683 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | inositol-tetrakisphosphate 1-kinase 3-like |
| 产物 | inositol-tetrakisphosphate 1-kinase 3-like |
| Arabidopsis | AT4G08170 (AT4G08170)Inositol 1,3,4-trisphosphate 5/6-kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826367] identity=81.8; qcov=1.02; evalue=3.14e-117; confidence=high |
| Rice | Os03g0230500 (DSM3)- identity=74.3; qcov=1.02; evalue=4.08e-112; confidence=high |
| GO | GO:0000287 (magnesium ion binding); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0032957 (inositol trisphosphate metabolic process); GO:0047325 (inositol-3,4,5,6-tetrakisphosphate 1-kinase activity); GO:0052725 (inositol-1,3,4-trisphosphate 6-kinase activity); GO:0052726 (inositol-1,3,4-trisphosphate 5-kinase activity) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04070 (Phosphatidylinositol signaling system - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF05770 (Ins134_P3_kin); PF17927 (Ins134_P3_kin_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010636 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057794241.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057794242.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057794241.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794241.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794241.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58189069 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C14 |
Chr2:58189069 |
G |
GA |
1bp_insertion | CDS_variant | 1 | C14 |
Chr2:58190006 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:58190015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C87 |
Chr2:58193168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,B140 |
Chr2:58193256 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794241.1PF17927
Ins134_P3_kin_N 77-156 aa
PF05770
Ins134_P3_kin 178-368 aa
XP_057794242.1PF05770
Ins134_P3_kin 14-204 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794241.1 |
Pfam | PF17927 |
Ins134_P3_kin_N | Domain | 77 | 156 | 3.4e-37 | 127.4 | Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain |
XP_057794241.1 |
Pfam | PF05770 |
Ins134_P3_kin | Domain | 178 | 368 | 7.9e-89 | 297.2 | Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain |
XP_057794242.1 |
Pfam | PF05770 |
Ins134_P3_kin | Domain | 14 | 204 | 3.8e-89 | 298.2 | Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。