Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003685`

染色体: Chr02 坐标: 58213387-58218807 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003685`
名称	SmilChr02G003685
描述	amino acid permease 6-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58213387 - 58218807 / `-`

ID 对照

NCBI Gene ID	`LOC131010638`
GeneID	`131010638`
locus_tag	`-`
NCBI Name	`LOC131010638`
原始查询	`SmilChr02G003685`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amino acid permease 6-like
产物	amino acid permease 6-like
Arabidopsis	`AT5G49630` (AAP6) amino acid permease 6 [Source:NCBI gene (formerly Entrezgene);Acc:835025] identity=75.1; qcov=0.996; evalue=0; confidence=high
Rice	`Os07g0134000` (OsAAP6) - identity=65.2; qcov=0.969; evalue=0; confidence=high
GO	GO:0005886 (plasma membrane)
KEGG	-
Pfam	PF01490 (Aa_trans)
InterPro	-
eggNOG	-
NR	GeneID:131010638

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057794245.1`
2	Vacuole	液泡	0.80000	`XP_057794245.1`
3	Vacuole membrane	液泡膜	0.80000	`XP_057794245.1`
4	Nucleus	细胞核	0.00000	`XP_057794245.1`
5	Chromosome	染色体	0.00000	`XP_057794245.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58213579`	`G`	`A`	EMS_canonical_SNV	stop_gained	13	A3,A9,B101,B24,B32,B33,B95,B96,C14,C48,C75,C8,D1
`Chr2:58213583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,A7,B133,C25,C81
`Chr2:58213624`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:58213732`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B70,C87
`Chr2:58213750`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:58213909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B70,C17,C87
`Chr2:58213915`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:58213923`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A7,B104
`Chr2:58213986`	`C`	`CA`	1bp_insertion	frameshift_variant	115	A10,A14,A15,A16,A18,A19,A2,A20,A4,A5,A8,B100,B101,B102,B103,B105,B106,B107,B110,B112,B118,B121,B122,B123,B126,B129,B130,B134,B135,B136,B137,B139,B140,B15,B25,B30,B31,B33,B35,B36,B37,B4,B40,B45,B46,B48,B49,B5,B51,B55,B57,B59,B60,B61,B63,B65,B66,B67,B7,B73,B74,B75,B79,B80,B81,B84,B86,B87,B88,B91,B93,B94,B97,B99,C1,C16,C2,C20,C21,C23,C24,C27,C28,C30,C33,C34,C36,C39,C4,C43,C46,C48,C49,C50,C51,C55,C57,C58,C62,C7,C71,C72,C73,C74,C79,C80,C81,C82,C84,C86,C9,D10,D11,D4,D7
`Chr2:58213989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,C75,D1
`Chr2:58214002`	`G`	`GA`	1bp_insertion	frameshift_variant	3	C26,C64,C66
`Chr2:58214002`	`G`	`GA`	1bp_insertion	CDS_variant	3	C26,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794245.1

507 aa

254

507

Aa_trans

PF01490 Aa_trans 35-339 aa

XP_057794246.1

480 aa

240

480

Aa_trans

PF01490 Aa_trans 35-463 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794245.1`	Pfam	`PF01490`	Aa_trans	Domain	35	339	1.1e-86	291.9	Transmembrane amino acid transporter protein
`XP_057794246.1`	Pfam	`PF01490`	Aa_trans	Domain	35	463	1.5e-119	400.0	Transmembrane amino acid transporter protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938263.1
AAATAAAAGTAGAGGAATACATCCAAAATTGCATTTATTATCCAATACGAATCAATCACCTCTTACATTTTTTTCATTTTCTTTTTCCTCATCGCCCCTTTTTTTTATATATATATATGTTGTCCGGTTATCGAATTTCAAGATCGACTCCAAACTCCAAACCATCTCTTAATAGTTAATACTCAACACAGTCTCTCTCTCTGAAGCACAAAAATGGCAAACGAGTTGGAGAAGAAGTCCATGTACATAGAGCAGCCGGC...

XM_057938262.1
GAATCAATCACCTCTTACATTTTTTTCATTTTCTTTTTCCTCATCGCCCCTTTTTTTTATATATATATATGTTGTCCGGTTATCGAATTTCAAGATCGACTCCAAACTCCAAACCATCTCTTAATAGTTAATACTCAACACAGTCTCTCTCTCTGAAGCACAAAAATGGCAAACGAGTTGGAGAAGAAGTCCATGTACATAGAGCAGCCGGCACTAGAAAATGGTGAAGCAAGCAAGAATTTCGACGACGACGGGCGTCC...

CDS

2 records

下载 CDS FASTA

LOC131010638
ATGGCAAACGAGTTGGAGAAGAAGTCCATGTACATAGAGCAGCCGGCACTAGAAAATGGTGAAGCAAGCAAGAATTTCGACGACGACGGGCGTCCCCGACGAAGTGGGACGGTGATGACGGCGAGTGCGCACATCATAACGGCGGTGATAGGGTCGGGGGTGCTGTCGTTGGCGTGGGCCATAGCACAGCTGGGATGGGTGGCCGGGCCAGCCGTGCTGATGGCCTTCTCCTTCATCACCTACCTCACCTCCACCTTCCT...

Protein

2 records

下载 Protein FASTA

XP_057794245.1
MANELEKKSMYIEQPALENGEASKNFDDDGRPRRSGTVMTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYLTSTFLADSYRHQGRRNYTYMDVVRAHLGGYKVQLCGLAQYGNLVGVTIGYTITASISMVAVKRSNCFHKEGHKAECSISSYPFMAIFAGIQLILSQIPNFHELSWLSIVAAVMSFAYSSIGLALSIAKLAGGGGHVETSLTGTRVGVDISGSEKVWKSFQAIGDMAFAYAYSTVLIEI...

XP_057794246.1
MANELEKKSMYIEQPALENGEASKNFDDDGRPRRSGTVMTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLMAFSFITYLTSTFLADSYRHQGRRNYTYMDVVRAHLGGYKVQLCGLAQYGNLVGVTIGYTITASISMVAVKRSNCFHKEGHKAECSISSYPFMAIFAGIQLILSQIPNFHELSWLSIVAAVMSFAYSSIGLALSIAKLAGGGGHVETSLTGTRVGVDISGSEKVWKSFQAIGDMAFAYAYSTVLIEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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