Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003688`

染色体: Chr02 坐标: 58274625-58280947 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003688`
名称	SmilChr02G003688
描述	cell division cycle 5-like protein
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58274625 - 58280947 / `-`

ID 对照

NCBI Gene ID	`LOC131010640`
GeneID	`131010640`
locus_tag	`-`
NCBI Name	`LOC131010640`
原始查询	`SmilChr02G003688`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cell division cycle 5-like protein
产物	cell division cycle 5-like protein
Arabidopsis	`AT1G09770` (CDC5) cell division cycle 5 [Source:NCBI gene (formerly Entrezgene);Acc:837506] identity=71; qcov=0.807; evalue=0; confidence=high
Rice	`Os04g0348300` - identity=71.5; qcov=0.8; evalue=0; confidence=high
GO	GO:0000398 (mRNA splicing, via spliceosome); GO:0000974 (Prp19 complex); GO:0005681 (spliceosomal complex)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00249 (Myb_DNA-binding); PF11831 (Myb_Cef); PF13921 (Myb_DNA-bind_6)
InterPro	-
eggNOG	-
NR	GeneID:131010640

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794248.1`
2	Nucleoplasm	核质	1.00000	`XP_057794248.1`
3	Chromosome	染色体	0.40000	`XP_057794249.1`
4	Chromatin	染色质	0.20000	`XP_057794248.1`
5	Nuclear speckle	核斑点	0.20000	`XP_057794248.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58274973`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:58275057`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C8
`Chr2:58275062`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,C48
`Chr2:58275099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr2:58275105`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A9,C75,D1
`Chr2:58275139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,C29,C6
`Chr2:58275212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58275221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr2:58275243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr2:58275251`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,B54
`Chr2:58275254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B120,B77,B85
`Chr2:58275427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B84,D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794248.1

999 aa

500

999

Myb_DNA-binding

Myb_DNA-bind_6

Myb_DNA-binding

Myb_DNA-bind_6

Myb_Cef

PF00249 Myb_DNA-binding 8-53 aa PF13921 Myb_DNA-bind_6 10-70 aa PF00249 Myb_DNA-binding 59-103 aa PF13921 Myb_DNA-bind_6 62-111 aa PF11831 Myb_Cef 406-654 aa

XP_057794249.1

923 aa

462

923

Myb_Cef

PF11831 Myb_Cef 330-578 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794248.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	8	53	5.5e-25	87.9	Myb-like DNA-binding domain
`XP_057794248.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	10	70	1.6e-22	80.2	Myb-like DNA-binding domain
`XP_057794248.1`	Pfam	`PF00249`	Myb_DNA-binding	Domain	59	103	5.5e-25	87.9	Myb-like DNA-binding domain
`XP_057794248.1`	Pfam	`PF13921`	Myb_DNA-bind_6	Domain	62	111	1.6e-22	80.2	Myb-like DNA-binding domain
`XP_057794248.1`	Pfam	`PF11831`	Myb_Cef	Family	406	654	3.6e-57	194.3	pre-mRNA splicing factor component
`XP_057794249.1`	Pfam	`PF11831`	Myb_Cef	Family	330	578	3.1e-57	194.5	pre-mRNA splicing factor component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938265.1
ATAAGCCCAACGCCTCTCTCTCTCTTTCTGTCTCGTATCTGTGAAATCCCCAAACCCCTATTTCCTTCCACCCTTATTTCTCAAAATTCCGGCGACCTCATCACCACCGCCCGCTCGCCACCGGCTTCCCCTTTCAGCGGACAAGATCGTCCGTCTCTCCCCGACCGCCTCAGCTGCGCCATCTCTCTCTCGGCCAAGGACAAGAACCCATCTCCAACTCACCATTGAATCATCCGAAACTCAACACCTCGCTCAGTCAA...

XM_057938266.1
ACGGAAGATGAAATTTTGAAAGCAGCCGTTATGAAATATGGGAAGAATCAATGGGCGAGGATTTCTTCTCTGTTGGTCCGGAAATCGGCTAAACAATGCAAGGCCCGCTGGTACGAGTGGCTGGATCCCTCAATCAAAAAGATAACTTTCATCCTTTGTGATCCGGAACTGATCCACTTCCTTCCATAACATTGCAGACTGAGTGGACCCGAGAAGAAGATGAGAAGTTATTGCATTTGGCAAAACTCATGCCCACCCAG...

CDS

2 records

下载 CDS FASTA

LOC131010640
ATGAGGATTATGATAAAGGGAGGTGTGTGGAAGAACACGGAAGATGAAATTTTGAAAGCAGCCGTTATGAAATATGGGAAGAATCAATGGGCGAGGATTTCTTCTCTGTTGGTCCGGAAATCGGCTAAACAATGCAAGGCCCGCTGGTACGAGTGGCTGGATCCCTCAATCAAAAAGACTGAGTGGACCCGAGAAGAAGATGAGAAGTTATTGCATTTGGCAAAACTCATGCCCACCCAGTGGAGGACAATTGCCCCTAT...

LOC131010640
ATGCCCACCCAGTGGAGGACAATTGCCCCTATTGTTGGGCGTACTCCATCACAGTGCCTGGAGAGATACGAGAAGCTTTTGGATGCGGCCTGTGCCAAGGATGAGAACTATGAACCTGGTGATGACCCACGAAAATTGCGCCCTGGAGAGATTGACCCCAATCCGGAATCGAAGCCTGCCCGTCCTGATCCTGTAGATATGGATGAAGATGAAAAGGAGATGCTTTCTGAAGCTCGGGCTCGGTTAGCCAACACTAGGGG...

Protein

2 records

下载 Protein FASTA

XP_057794248.1
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINLRHKKRKRRGIDYNAEIPFEKRPPPGFYDIADEDRPTELVKFPTTIEELEGERRVDKEARLRKQ...

XP_057794249.1
MPTQWRTIAPIVGRTPSQCLERYEKLLDAACAKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINLRHKKRKRRGIDYNAEIPFEKRPPPGFYDIADEDRPTELVKFPTTIEELEGERRVDKEARLRKQDIARNKIAERQDAPSAILQANKLNDPEAVRKRSRLNLPAPQIPDHELEAIAKMGIASDLLGNEELTEGNAATRALL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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