Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003690`

染色体: Chr02 坐标: 58303033-58306221 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003690`
名称	SmilChr02G003690
描述	receptor protein-tyrosine kinase CEPR1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58303033 - 58306221 / `-`

ID 对照

NCBI Gene ID	`LOC131010643`
GeneID	`131010643`
locus_tag	`-`
NCBI Name	`LOC131010643`
原始查询	`SmilChr02G003690`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor protein-tyrosine kinase CEPR1
产物	receptor protein-tyrosine kinase CEPR1
Arabidopsis	`AT5G49660` (XIP1) Leucine-rich repeat transmembrane protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835028] identity=60.3; qcov=0.969; evalue=0; confidence=high
Rice	`Os12g0632900` - identity=55.5; qcov=0.974; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131010643

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057794255.1`
2	Nucleus	细胞核	0.00000	`XP_057794255.1`
3	Chromosome	染色体	0.00000	`XP_057794255.1`
4	Centromere	着丝粒	0.00000	`XP_057794255.1`
5	Chromatin	染色质	0.00000	`XP_057794255.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58303623`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr2:58303690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,A11
`Chr2:58304058`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:58304139`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B132,B9,C10,C67
`Chr2:58304411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,A20,B79,C43
`Chr2:58304421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58304436`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B47,B84,B95,D1
`Chr2:58304481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B124,B20,B27,C25,C85
`Chr2:58304499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr2:58304740`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr2:58304775`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:58304832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794255.1

935 aa

468

935

LRR_14

LRR_1

LRR_14

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF23598 LRR_14 130-240 aa PF00560 LRR_1 133-155 aa PF00560 LRR_1 184-205 aa PF23598 LRR_14 225-312 aa PF00560 LRR_1 231-253 aa PF00560 LRR_1 256-277 aa PF00560 LRR_1 447-469 aa PF00560 LRR_1 498-517 aa PF00069 Pkinase 640-904 aa PF07714 PK_Tyr_Ser-Thr 642-905 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794255.1`	Pfam	`PF23598`	LRR_14	Repeat	130	240	1.5e-25	90.4	Leucine-rich repeat region
`XP_057794255.1`	Pfam	`PF00560`	LRR_1	Repeat	133	155	2.6e-38	122.4	Leucine Rich Repeat
`XP_057794255.1`	Pfam	`PF00560`	LRR_1	Repeat	184	205	2.6e-38	122.4	Leucine Rich Repeat
`XP_057794255.1`	Pfam	`PF23598`	LRR_14	Repeat	225	312	1.5e-25	90.4	Leucine-rich repeat region
`XP_057794255.1`	Pfam	`PF00560`	LRR_1	Repeat	231	253	2.6e-38	122.4	Leucine Rich Repeat
`XP_057794255.1`	Pfam	`PF00560`	LRR_1	Repeat	256	277	2.6e-38	122.4	Leucine Rich Repeat
`XP_057794255.1`	Pfam	`PF00560`	LRR_1	Repeat	447	469	2.6e-38	122.4	Leucine Rich Repeat
`XP_057794255.1`	Pfam	`PF00560`	LRR_1	Repeat	498	517	2.6e-38	122.4	Leucine Rich Repeat
`XP_057794255.1`	Pfam	`PF00069`	Pkinase	Domain	640	904	2.1e-46	159.2	Protein kinase domain
`XP_057794255.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	642	905	1.1e-40	140.4	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938272.1
TGTCTCTCTATCACTCAAATTATCCCACTTATATATACTCGACCCTCTCTCTCTTTCCCTCTCCCTCCTTACCACCATGTGGATAACCATTTTCCCTCTCCCTCCTTCCCACATCTCCACAAACTACACTTTCACTCTCTGATCCATGGCTCCCAACCGTCATTTCCTCGCCGTCGCTGCCACCGTCATCGCCGCCCTTTCTACTTGCTGCCATGCTGCCGCTACCGCGGAATTCTTCTCCATCATGACCAATTCCGTTC...

CDS

1 records

下载 CDS FASTA

LOC131010643
ATGGCTCCCAACCGTCATTTCCTCGCCGTCGCTGCCACCGTCATCGCCGCCCTTTCTACTTGCTGCCATGCTGCCGCTACCGCGGAATTCTTCTCCATCATGACCAATTCCGTTCCGGTGCCCAATTGGAAAGGCCCGAGCTACTGCAACTACACCGGAGTTTCATGCGACGACCAACATAACGTGGTGGAGCTAGACCTCTCCGGCTGGTCCCTCACCGGAAAATTCCCAGAAGAAATATGCACGTATCTTCCACGACT...

Protein

1 records

下载 Protein FASTA

XP_057794255.1
MAPNRHFLAVAATVIAALSTCCHAAATAEFFSIMTNSVPVPNWKGPSYCNYTGVSCDDQHNVVELDLSGWSLTGKFPEEICTYLPRLSSLRIGLNTFHGDFPLGITGCSFLEELNMSATHLTGPLPDFFPLKKLRILDLSYNKFSGDFPMSITNLTNLEVLNFNENPGFNLWKLPENLTGLTTLKTLVLSTCQLYGTLPPWLGNMTSLVDLELTGNAYTGSIPPQLGRLRNLRQLELYYNHLTGELPEEIGNLTELRDLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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