当前解析结果
SmilChr02G003695| 统一新 Gene ID | SmilChr02G003695 |
|---|---|
| 名称 | SmilChr02G003695 |
| 描述 | zinc finger protein MAGPIE-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58407080 - 58409466 / + |
| NCBI Gene ID | LOC131010648 |
|---|---|
| GeneID | 131010648 |
| locus_tag | - |
| NCBI Name | LOC131010648 |
| 原始查询 | SmilChr02G003695 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger protein MAGPIE-like |
| 产物 | zinc finger protein MAGPIE-like |
| Arabidopsis | AT1G03840 (MGP)C2H2 and C2HC zinc fingers superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839396] identity=49.4; qcov=1.22; evalue=4.51e-141; confidence=high |
| Rice | Os01g0242200 (OsIDD8)- identity=50.5; qcov=1.02; evalue=7.78e-121; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus) |
| KEGG | - |
| Pfam | PF22992 (C2CH-4th_BIRD-IDD); PF22995 (C2CH-3rd_BIRD-IDD); PF22996 (C2H2-2nd_BIRD-IDD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010648 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794259.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057794259.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057794259.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057794259.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057794259.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58407333 |
AT |
A |
1bp_deletion | frameshift_variant | 10 | B13,B133,B3,B38,B39,B97,C18,C30,C59,C84 |
Chr2:58407335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:58407700 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:58407747 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A23,B29 |
Chr2:58408465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:58408521 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B140,B86 |
Chr2:58408714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58408839 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | B107,B140 |
Chr2:58408839 |
CA |
C |
1bp_deletion | CDS_variant | 2 | B107,B140 |
Chr2:58408866 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58408920 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:58408930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794259.1PF22996
C2H2-2nd_BIRD-IDD 90-124 aa
PF22995
C2CH-3rd_BIRD-IDD 128-152 aa
PF22992
C2CH-4th_BIRD-IDD 155-194 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794259.1 |
Pfam | PF22996 |
C2H2-2nd_BIRD-IDD | Family | 90 | 124 | 1.8e-20 | 73.4 | BIRD-IDD transcription factor, second C2H2 zinc finger |
XP_057794259.1 |
Pfam | PF22995 |
C2CH-3rd_BIRD-IDD | Domain | 128 | 152 | 1.5e-13 | 50.8 | BIRD-IDD transcription factor, third C2HC zinc finger |
XP_057794259.1 |
Pfam | PF22992 |
C2CH-4th_BIRD-IDD | Domain | 155 | 194 | 2.9e-21 | 75.8 | BIRD-IDD transcription factor, fourth C2HC zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。