当前解析结果
SmilChr02G003699| 统一新 Gene ID | SmilChr02G003699 |
|---|---|
| 名称 | SmilChr02G003699 |
| 描述 | uncharacterized SmilChr02G003699 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58454918 - 58457152 / + |
| NCBI Gene ID | LOC131010653 |
|---|---|
| GeneID | 131010653 |
| locus_tag | - |
| NCBI Name | LOC131010653 |
| 原始查询 | SmilChr02G003699 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | formin-like protein (DUF1005) [Source:NCBI gene (formerly Entrezgene);Acc:837537]; symbol=AT1G10020; hit=AT1G10020; species=arabidopsis; confidence=high |
| 产物 | formin-like protein (DUF1005) [Source:NCBI gene (formerly Entrezgene);Acc:837537]; symbol=AT1G10020; hit=AT1G10020; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G10020 (AT1G10020)formin-like protein (DUF1005) [Source:NCBI gene (formerly Entrezgene);Acc:837537] identity=66; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0133500- identity=58.6; qcov=1.03; evalue=5.18e-174; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF06219 (DUF1005) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010653 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057794269.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057794269.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057794269.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057794269.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057794269.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58455277 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:58455314 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B133,C25,C81 |
Chr2:58455322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B74,B79,C43 |
Chr2:58455343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B131,B65,C8 |
Chr2:58455427 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B131,B140,B65,C8 |
Chr2:58455433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B94,C12,C47 |
Chr2:58455523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B109,B112,B77 |
Chr2:58455527 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A21,B130,B136,B46,B54 |
Chr2:58455532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B77 |
Chr2:58455592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B130,B74,B99,C83 |
Chr2:58455601 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr2:58455615 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B24,B33,C48 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794269.1PF06219
DUF1005 1-448 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794269.1 |
Pfam | PF06219 |
DUF1005 | Family | 1 | 448 | 4.5e-195 | 649.6 | Protein of unknown function (DUF1005) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。