Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003702`

染色体: Chr02 坐标: 58486939-58494667 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003702`
名称	SmilChr02G003702
描述	putative lipase YDL109C
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58486939 - 58494667 / `-`

ID 对照

NCBI Gene ID	`LOC131010655`
GeneID	`131010655`
locus_tag	`-`
NCBI Name	`LOC131010655`
原始查询	`SmilChr02G003702`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative lipase YDL109C
产物	putative lipase YDL109C
Arabidopsis	`AT1G10040` (AT1G10040) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837539] identity=58.5; qcov=0.832; evalue=2.44e-131; confidence=high
Rice	`Os03g0726800` (OSJNBb0122C16.16) - identity=51.2; qcov=0.936; evalue=1.84e-125; confidence=high
GO	GO:0044255 (GO:0044255)
KEGG	-
Pfam	PF05057 (DUF676)
InterPro	-
eggNOG	-
NR	GeneID:131010655

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.40000	`XP_057794272.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057794272.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057794272.1`
4	Golgi apparatus	高尔基体	0.20000	`XP_057794272.1`
5	Nucleus	细胞核	0.00000	`XP_057794272.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58491191`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58491401`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A9,C75,D1
`Chr2:58491524`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C49
`Chr2:58491859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A3,B24,B33,C48
`Chr2:58492515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:58492578`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58493970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C74
`Chr2:58494014`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,C62
`Chr2:58494193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A4,B120,B85
`Chr2:58494220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B82
`Chr2:58494259`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,C62
`Chr2:58494299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794272.1

405 aa

202

405

DUF676

PF05057 DUF676 70-302 aa

XP_057794273.1

405 aa

202

405

DUF676

PF05057 DUF676 70-302 aa

XP_057794274.1

405 aa

202

405

DUF676

PF05057 DUF676 70-302 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794272.1`	Pfam	`PF05057`	DUF676	Family	70	302	5.9e-65	219.6	Putative serine esterase (DUF676)
`XP_057794273.1`	Pfam	`PF05057`	DUF676	Family	70	302	5.9e-65	219.6	Putative serine esterase (DUF676)
`XP_057794274.1`	Pfam	`PF05057`	DUF676	Family	70	302	5.9e-65	219.6	Putative serine esterase (DUF676)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057938290.1
CGAAAACGACATGATTTAGAGTTAAGATTAGCAGCATGATTGCAGCAGAGTACAACCTTGACTTTCTTCAAAAATTCCAACAGAAACATCTGATACTTCATCTTTGTTTCTAATATCAAGTCGGACAAGTACACACAAATTTTGTAGAAGCAGAGAAGCAAGAACACAGTGTGCGCTCGGTGATGGAGAATAGAGGCGCAGAGGCTGTGGAAGAGCAAGAGAGTAAGAAATTAGAGATGGATTTGGAGGGAAGAAATGAT...

XM_057938291.1
CGAAAACGACATGATTTAGAGTTAAGATTAGCAGCATGATTGCAGCAGAGTACAACCTTGACTTTCTTCAAAAATTCCAACAGAAACATCTGATACTTCATCTTTGTTTCTAATATCAAGTCGGACAAGTACACACAAATTTTGTAGAAGCAGAGAAGCAAGAACACAGTGTGCGCTCGGTGATGGAGAATAGAGGCGCAGAGGCTGTGGAAGAGCAAGAGAGTAAGAAATTAGAGATGGATTTGGAGGGAAGAAATGAT...

CDS

3 records

下载 CDS FASTA

LOC131010655
ATGGAGAATAGAGGCGCAGAGGCTGTGGAAGAGCAAGAGAGTAAGAAATTAGAGATGGATTTGGAGGGAAGAAATGATCTGAGCAATCAGAAGAAGAAAAGGTACTCGTGGATCCCGAGATTTGCGTGTGCCAGATTAGACGACGGCGATGTTGCGGTGGCGGAGAAGCCGGATGCCAGAGGTTTCGACGTTTCTAATAGGAAGGATCAATCGGCGACGCATCTGATTCTTATGGTCAATGGAATTATTGGAAGTGCTCA...

Protein

3 records

下载 Protein FASTA

XP_057794272.1
MENRGAEAVEEQESKKLEMDLEGRNDLSNQKKKRYSWIPRFACARLDDGDVAVAEKPDARGFDVSNRKDQSATHLILMVNGIIGSAQNWRYAAKQFVKAYPSEVVVHCSDSNSSLLTLDGVDVMGKRLADEVISVVSRHSNLEKISFVGHSLGGLVARYAIAVLYQKDLTRKDSDENGECGGDELVKSPLEEKTRGKIAGLEPMNFITIATPHLGARGHRQIPVLCGFRSLEKAALHASGVLRRTGKHLFLRDDNNEKPP...

XP_057794273.1
MENRGAEAVEEQESKKLEMDLEGRNDLSNQKKKRYSWIPRFACARLDDGDVAVAEKPDARGFDVSNRKDQSATHLILMVNGIIGSAQNWRYAAKQFVKAYPSEVVVHCSDSNSSLLTLDGVDVMGKRLADEVISVVSRHSNLEKISFVGHSLGGLVARYAIAVLYQKDLTRKDSDENGECGGDELVKSPLEEKTRGKIAGLEPMNFITIATPHLGARGHRQIPVLCGFRSLEKAALHASGVLRRTGKHLFLRDDNNEKPP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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