Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003703`

染色体: Chr02 坐标: 58498437-58502230 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003703`
名称	SmilChr02G003703
描述	uncharacterized protein At4g37920
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58498437 - 58502230 / `+`

ID 对照

NCBI Gene ID	`LOC131010656`
GeneID	`131010656`
locus_tag	`-`
NCBI Name	`LOC131010656`
原始查询	`SmilChr02G003703`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:840539]; symbol=AT1G36320; hit=AT1G36320; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:840539]; symbol=AT1G36320; hit=AT1G36320; species=arabidopsis; confidence=high
Arabidopsis	`AT1G36320` (AT1G36320) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:840539] identity=64.2; qcov=0.909; evalue=0; confidence=high
Rice	`Os01g0306800` (P0552C05.41-2) - identity=47.7; qcov=0.73; evalue=5.77e-108; confidence=high
GO	GO:0009535 (chloroplast thylakoid membrane); GO:0009941 (chloroplast envelope)
KEGG	-
Pfam	PF26740 (DUF8246); PF30870 (At4g37920_C); PF30872 (At4g37920_M)
InterPro	-
eggNOG	-
NR	GeneID:131010656

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794275.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057794275.1`
3	Nucleus	细胞核	0.00000	`XP_057794275.1`
4	Chromosome	染色体	0.00000	`XP_057794275.1`
5	Centromere	着丝粒	0.00000	`XP_057794275.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58498641`	`A`	`AC`	1bp_insertion	frameshift_variant	22	A22,A4,B106,B117,B129,B132,B139,B29,B4,B44,B94,C16,C25,C27,C38,C52,C54,C66,C82,C86,C87,D6
`Chr2:58498652`	`CT`	`C`	1bp_deletion	frameshift_variant	25	A22,A4,A7,B106,B109,B114,B117,B129,B139,B29,B4,B44,B84,B94,C16,C25,C27,C38,C52,C66,C82,C86,C87,D11,D6
`Chr2:58498666`	`TCA`	`T`	2bp_deletion	frameshift_variant	24	A22,A4,A7,B106,B109,B114,B117,B129,B139,B29,B4,B44,B84,B94,C16,C25,C38,C52,C66,C82,C86,C87,D11,D6
`Chr2:58498688`	`TCA`	`T`	2bp_deletion	frameshift_variant	2	A22,C64
`Chr2:58498688`	`TCA`	`T`	2bp_deletion	CDS_variant	2	A22,C64
`Chr2:58498693`	`G`	`GGA`	2bp_insertion	frameshift_variant	2	A22,C64
`Chr2:58498693`	`G`	`GGA`	2bp_insertion	CDS_variant	2	A22,C64
`Chr2:58498705`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A22,C64
`Chr2:58498717`	`TC`	`T`	1bp_deletion	frameshift_variant	2	A22,C64
`Chr2:58498717`	`TC`	`T`	1bp_deletion	CDS_variant	2	A22,C64
`Chr2:58498720`	`CG`	`C`	1bp_deletion	frameshift_variant	2	A22,C64
`Chr2:58498720`	`CG`	`C`	1bp_deletion	CDS_variant	2	A22,C64

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794275.1

440 aa

220

440

DUF8246

At4g37920_M

At4g37920_C

PF26740 DUF8246 119-263 aa PF30872 At4g37920_M 278-343 aa PF30870 At4g37920_C 348-440 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794275.1`	Pfam	`PF26740`	DUF8246	Domain	119	263	6.9e-72	240.8	Domain of unknown function (DUF8246)
`XP_057794275.1`	Pfam	`PF30872`	At4g37920_M	Domain	278	343	4.4e-34	116.9	At4g37920-like middle domain
`XP_057794275.1`	Pfam	`PF30870`	At4g37920_C	Domain	348	440	5.4e-43	146.0	At4g37920-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938292.1
GTGTGTTCACTTACTAATATCCTTTTCTTTTTTTGAGAGGACTACGACGTCGTTCCTTTTCATTTCCCCTCTTTGTTTCGATTGAACCCTAGAAATTATCTATATGGTTTGCAGTAATTGTTCGAGATTTTGATCACCTGAAGCCTTCAAAATGGAGCTGGCTTCCATTCATCTCAGCTCCTACTACGCCGTTTCGCCTATACGACCACCGGCATCTGCCGCCAGAAGCTCATCTTCGTCCCTTCCTATTATCAAAGCTA...

CDS

1 records

下载 CDS FASTA

LOC131010656
ATGGAGCTGGCTTCCATTCATCTCAGCTCCTACTACGCCGTTTCGCCTATACGACCACCGGCATCTGCCGCCAGAAGCTCATCTTCGTCCCTTCCTATTATCAAAGCTACCTTTCCAGAGATTTATTCATCTCGTTTCGTTTCTAAATCCAAAGGCTTTCTCTTGCCAAGTGAGAAAGTTAGATGTTCGTCTTCGTCCCATGCTGCTGGTCTTGATAATGCAACAGCTGCAGCGAGTGGATCAGCTCAAGAACATGTGTC...

Protein

1 records

下载 Protein FASTA

XP_057794275.1
MELASIHLSSYYAVSPIRPPASAARSSSSSLPIIKATFPEIYSSRFVSKSKGFLLPSEKVRCSSSSHAAGLDNATAAASGSAQEHVSSAEKHIIEDDTANKNDRKHQDSVATEQLDDNKMIRICDKLIGVFMVDKPTPTDWRRLLTFSKEWDNIRPHFYKRCQDRADNNDDPGMKHKLLRLARKLKEIDEDIQRHDELLDAISKSPSEVGEIVSRRRKDFTKEFFVHLHTVAESYHDNPTEQNAVAKLGNTCIAAVQAYD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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