Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003707`

染色体: Chr02 坐标: 58600218-58608107 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003707`
名称	SmilChr02G003707
描述	branched-chain-amino-acid aminotransferase 2, chloroplastic
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58600218 - 58608107 / `+`

ID 对照

NCBI Gene ID	`LOC131010660`
GeneID	`131010660`
locus_tag	`-`
NCBI Name	`LOC131010660`
原始查询	`SmilChr02G003707`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	branched-chain-amino-acid aminotransferase 2, chloroplastic
产物	branched-chain-amino-acid aminotransferase 2%2C chloroplastic
Arabidopsis	`AT1G10070` (BCAT-2) branched-chain amino acid transaminase 2 [Source:NCBI gene (formerly Entrezgene);Acc:837543] identity=68.1; qcov=0.937; evalue=3.73e-179; confidence=high
Rice	`Os03g0106400` - identity=64.1; qcov=0.892; evalue=3.21e-164; confidence=high
GO	GO:0004084 (branched-chain-amino-acid:2-oxoglutarate transaminase activity); GO:0009081 (branched-chain amino acid metabolic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00290 (Valine, leucine and isoleucine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00966 (Glucosinolate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01063 (Aminotran_4)
InterPro	-
eggNOG	-
NR	GeneID:131010660

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057794280.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057794280.1`
3	Nucleus	细胞核	0.00000	`XP_057794280.1`
4	Chromosome	染色体	0.00000	`XP_057794280.1`
5	Centromere	着丝粒	0.00000	`XP_057794280.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58600452`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,B54
`Chr2:58600467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:58600711`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58604642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B86
`Chr2:58606390`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58607468`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794280.1

381 aa

190

381

Aminotran_4

PF01063 Aminotran_4 100-338 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794280.1`	Pfam	`PF01063`	Aminotran_4	Domain	100	338	9.1e-35	121.3	Amino-transferase class IV

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938297.1
TATTGATGAATAAAAACAAAATCAAAGATACGTACTAATGTACTACTATACAATATCTAGTAGTGTTGAAAAAGTTAGGCGAAGAAGCAGGTTAAATAGGTAATAGTGTATGTGTGCATGTCTATCCAATTCCCAGCTTCCGTTCATTAACATTCCTCTTCTACAAATCCACCTTCTTCCTCTCTTAATTTCATCACAGCAAATAAAATAAAAATATGATTCTCAAAAGTGTGAGTAGCAGAATCTTACGCCAGATTAGA...

CDS

1 records

下载 CDS FASTA

LOC131010660
ATGATTCTCAAAAGTGTGAGTAGCAGAATCTTACGCCAGATTAGAGCAACGCCTTCATATAAATCACAGATCGGAGTGAGGTATTTGGGGAGTCAAGCTGCGTCTCCTCTGCAAGAAGGCTGCGAAAGCGGCGTGGAGGAAGAGATGGAGTGGGACAATCTTGGATTCGGTTTAATGCAGACTGATTATATGTATGTAATGAAGTGTGGAGAAGACGACGAGTTCCAGCCTGGTCAACTCAGCCGTTTCGGGAATATCGA...

Protein

1 records

下载 Protein FASTA

XP_057794280.1
MILKSVSSRILRQIRATPSYKSQIGVRYLGSQAASPLQEGCESGVEEEMEWDNLGFGLMQTDYMYVMKCGEDDEFQPGQLSRFGNIELSPSAGVLNYGQGVFEGTKAYRRENGGLYLFRPQENAIRMQIGADRMCMQSPSVYQFIHAVKQTALANRRWIPPSGKGSLYIRPLLIGSGPVLGLAPASEYTFLVYASPVGNYFKEGTAPINLYVEDEFHRAARGGAGGVKSITNYAPVLKAMRRAKDKGFSDVLYLDAKNKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

跳转到基因组浏览器