Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003713`

染色体: Chr02 坐标: 58732871-58736966 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003713`
名称	SmilChr02G003713
描述	uncharacterized SmilChr02G003713
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58732871 - 58736966 / `-`

ID 对照

NCBI Gene ID	`LOC131010664`
GeneID	`131010664`
locus_tag	`-`
NCBI Name	`LOC131010664`
原始查询	`SmilChr02G003713`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841058]; symbol=AT1G44920; hit=AT1G44920; species=arabidopsis; confidence=high
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841058]; symbol=AT1G44920; hit=AT1G44920; species=arabidopsis; confidence=high
Arabidopsis	`AT1G44920` (AT1G44920) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:841058] identity=60.5; qcov=0.832; evalue=1.13e-88; confidence=high
Rice	`Os03g0729100` - identity=63; qcov=0.646; evalue=5.97e-72; confidence=high
GO	-
KEGG	-
Pfam	PF11255 (DUF3054)
InterPro	-
eggNOG	-
NR	GeneID:131010664

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057794283.1`
2	Chloroplast thylakoid	类囊体	1.00000	`XP_057794283.1`
3	Chloroplast membrane	叶绿体膜	1.00000	`XP_057794284.1`
4	Chloroplast thylakoid membrane	类囊体膜	0.20000	`XP_057794283.1`
5	Nucleus	细胞核	0.00000	`XP_057794283.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58733074`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B91,B95,B98
`Chr2:58733324`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58733326`	`G`	`GT`	1bp_insertion	frameshift_variant	2	B107,B140
`Chr2:58733326`	`G`	`GT`	1bp_insertion	CDS_variant	2	B107,B140
`Chr2:58733419`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr2:58736282`	`C`	`CTT`	2bp_insertion	frameshift_variant	5	B20,B25,B73,C63,C80
`Chr2:58736282`	`C`	`CTT`	2bp_insertion	CDS_variant	5	B20,B25,B73,C63,C80
`Chr2:58736285`	`C`	`CA`	1bp_insertion	frameshift_variant	191	A10,A13,A14,A15,A16,A18,A19,A2,A21,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B10,B101,B102,B103,B104,B105,B106,B107,B108,B109,B110,B111,B112,B113,B114,B117,B118,B121,B123,B124,B125,B126,B127,B129,B13,B130,B131,B132,B133,B135,B137,B139,B140,B15,B18,B2,B20,B21,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B33,B35,B37,B38,B39,B4,B40,B41,B42,B44,B45,B47,B5,B50,B52,B53,B54,B55,B56,B58,B59,B6,B60,B62,B63,B65,B66,B69,B7,B70,B71,B72,B74,B75,B76,B77,B78,B79,B8,B80,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B95,B99,C1,C11,C12,C13,C15,C16,C18,C19,C2,C20,C22,C24,C25,C26,C28,C29,C3,C30,C33,C34,C35,C36,C37,C38,C39,C40,C41,C42,C43,C44,C45,C46,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C58,C59,C60,C61,C62,C64,C65,C66,C67,C69,C70,C71,C73,C74,C75,C76,C78,C79,C8,C81,C82,C83,C87,D1,D3,D4,D6,D7,D8,D9
`Chr2:58736288`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A14,B118
`Chr2:58736492`	`AGG`	`*`	2bp_deletion	CDS_variant	3	B118,B78,C10
`Chr2:58736535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr2:58736666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B91

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794283.1

269 aa

134

269

DUF3054

PF11255 DUF3054 124-234 aa

XP_057794284.1

268 aa

134

268

DUF3054

PF11255 DUF3054 124-234 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794283.1`	Pfam	`PF11255`	DUF3054	Family	124	234	6e-31	107.8	Protein of unknown function (DUF3054)
`XP_057794284.1`	Pfam	`PF11255`	DUF3054	Family	124	234	5.9e-31	107.8	Protein of unknown function (DUF3054)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938301.1
ACAGAAAATGTGTAAATGCATTTACGAGTCTGAATTTATTTTTTGACCAAACTTAAAACTCTTGTTTAAAGTGATCTCTTTTTTGAAAAAAAAAGACTCGGGATTTCAAAATTTTCCATAGATAGTATAATTAGCGACCACATAATTTTATCTTGTCAGTTTCTTCGCAGGAAAAAAAACAAGAAAAAAAAAAGAGAAAAGTTCAGACATTCCAATGATGCCTCTGCTAACTCCGGCCGCCAACGGCGGCGGAGCGGTGC...

XM_057938300.1
TTCAAAATTTTCCATAGATAGTATAATTAGCGACCACATAATTTTATCTTGTCAGTTTCTTCGCAGGAAAAAAAACAAGAAAAAAAAAAGAGAAAAGTTCAGACATTCCAATGATGCCTCTGCTAACTCCGGCCGCCAACGGCGGCGGAGCGGTGCTCTCCTCCACCCACCACTGCTCCCTCAAATCCGTCCACCCCGTCGCTCCCCTTTTCTCGAAACGCCGCCCCACTCTCTCAGCCTCCCGCACCATCAAACCCCTC...

CDS

2 records

下载 CDS FASTA

LOC131010664
ATGATGCCTCTGCTAACTCCGGCCGCCAACGGCGGCGGAGCGGTGCTCTCCTCCACCCACCACTGCTCCCTCAAATCCGTCCACCCCGTCGCTCCCCTTTTCTCGAAACGCCGCCCCACTCTCTCAGCCTCCCGCACCATCAAACCCCTCACGCTAGCCAACGCCGCCGAATCCTCCGGCGGCGCCTCCGCCAAGCCCGCCTCCACGAGCACCTCCTCCTCCCCCGCCCCTTTTGACGACCAGGGCTCCAACCCGAATCC...

Protein

2 records

下载 Protein FASTA

XP_057794283.1
MMPLLTPAANGGGAVLSSTHHCSLKSVHPVAPLFSKRRPTLSASRTIKPLTLANAAESSGGASAKPASTSTSSSPAPFDDQGSNPNPISFVGQEKVPLEGVIQFEKPDSSSRLAKWGLVAVLAGGDVAMLLLFAAIGRSSHGLPVFDFETFKTADPFIAGWFLSAYFLGGYSKEGRGKNGLQSAVVAAAKSWSLGIPLGLVIRALSIGHPPPTNFMLVTMGSTAVLLIGWRALFFTIFPSDKGKKNDVYKRGSPFELFEV...

XP_057794284.1
MMPLLTPAANGGGAVLSSTHHCSLKSVHPVAPLFSKRRPTLSASRTIKPLTLANAAESSGGASAKPASTSTSSSPAPFDDQGSNPNPISFVGQEKVPLEGVIQFEKPDSSSRLAKWGLVAVLAGGDVAMLLLFAAIGRSSHGLPVFDFETFKTADPFIAGWFLSAYFLGGYSKEGRGKNGLQSAVVAAAKSWSLGIPLGLVIRALSIGHPPPTNFMLVTMGSTAVLLIGWRALFFTIFPSDKGKKNDVYKRGSPFELFEL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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