Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003715`

染色体: Chr02 坐标: 58752554-58754873 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003715`
名称	SmilChr02G003715
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58752554 - 58754873 / `-`

ID 对照

NCBI Gene ID	`LOC131010665`
GeneID	`131010665`
locus_tag	`-`
NCBI Name	`LOC131010665`
原始查询	`SmilChr02G003715`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial
产物	putative pentatricopeptide repeat-containing protein At1g12700%2C mitochondrial
Arabidopsis	`AT1G12700` (RPF1) RNA processing FACTOR [Source:NCBI gene (formerly Entrezgene);Acc:837825] identity=37.3; qcov=0.874; evalue=2.58e-127; confidence=medium
Rice	`Os10g0495200` (Rf4) - identity=30.5; qcov=0.884; evalue=2.42e-83; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131010665

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057794285.1`
2	Chloroplast	叶绿体	0.20000	`XP_057794285.1`
3	Nucleus	细胞核	0.00000	`XP_057794285.1`
4	Chromosome	染色体	0.00000	`XP_057794285.1`
5	Centromere	着丝粒	0.00000	`XP_057794285.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58752658`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B124
`Chr2:58752708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58752868`	`G`	`A`	EMS_canonical_SNV	stop_gained	17	A23,A5,B128,B54,B57,B58,B62,B63,B7,B77,B95,C1,C16,C39,C5,C54,C83
`Chr2:58752881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:58752975`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:58753021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr2:58753045`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:58753135`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:58753142`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B113,B30
`Chr2:58753163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B107,B118,B140
`Chr2:58753165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A9,B125,B84,B98,D7
`Chr2:58753193`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794285.1

586 aa

293

586

PPR_3

PPR_2

PPR

PPR_2

PPR

TPR_24

PPR_1

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PF13812 PPR_3 57-100 aa PF13041 PPR_2 68-116 aa PF01535 PPR 73-100 aa PF01535 PPR 142-170 aa PF13041 PPR_2 174-223 aa PF01535 PPR 181-203 aa PF23276 TPR_24 196-300 aa PF12854 PPR_1 209-237 aa PF13812 PPR_3 209-254 aa PF13041 PPR_2 209-258 aa PF01535 PPR 213-242 aa PF13812 PPR_3 233-290 aa PF12854 PPR_1 241-271 aa PF13041 PPR_2 245-293 aa PF01535 PPR 247-274 aa PF13812 PPR_3 268-324 aa PF12854 PPR_1 276-302 aa PF13041 PPR_2 280-327 aa PF01535 PPR 282-302 aa PF13812 PPR_3 310-361 aa PF12854 PPR_1 311-341 aa PF13041 PPR_2 314-363 aa PF01535 PPR 318-347 aa PF12854 PPR_1 345-374 aa PF13041 PPR_2 349-397 aa PF01535 PPR 353-381 aa PF12854 PPR_1 380-413 aa PF13041 PPR_2 385-433 aa PF01535 PPR 387-414 aa PF13812 PPR_3 407-464 aa PF12854 PPR_1 417-448 aa PF13041 PPR_2 420-468 aa PF01535 PPR 422-452 aa PF12854 PPR_1 450-481 aa PF13041 PPR_2 454-491 aa PF01535 PPR 457-487 aa PF13812 PPR_3 478-533 aa PF12854 PPR_1 485-518 aa PF13041 PPR_2 489-537 aa PF01535 PPR 493-521 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	57	100	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	68	116	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	73	100	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	142	170	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	174	223	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	181	203	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF23276`	TPR_24	Repeat	196	300	2.7e-27	96.0	Pentatricopeptide repeat-containing protein
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	209	237	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	209	254	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	209	258	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	213	242	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	233	290	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	241	271	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	245	293	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	247	274	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	268	324	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	276	302	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	280	327	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	282	302	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	310	361	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	311	341	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	314	363	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	318	347	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	345	374	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	349	397	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	353	381	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	380	413	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	385	433	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	387	414	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	407	464	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	417	448	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	420	468	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	422	452	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	450	481	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	454	491	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	457	487	1.3e-84	273.4	PPR repeat
`XP_057794285.1`	Pfam	`PF13812`	PPR_3	Repeat	478	533	9.1e-48	160.9	Pentatricopeptide repeat domain
`XP_057794285.1`	Pfam	`PF12854`	PPR_1	Repeat	485	518	7.5e-118	384.6	PPR repeat
`XP_057794285.1`	Pfam	`PF13041`	PPR_2	Repeat	489	537	4.7e-143	466.0	PPR repeat family
`XP_057794285.1`	Pfam	`PF01535`	PPR	Repeat	493	521	1.3e-84	273.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938302.1
ACTACATGTCACTAATTGAGTCGTTTTTCGCCATCTTAATTATTTTTTGAACCACTCTCAATTTAACAATTCCAAATATAAAATCTACTCTGTTTATTGCTTATGTGGCAATACCGTGTATAATGTATAATTTATGCGAGTTTTGAGAATTAATAATTATTTACTTAAAAATTAAAAATAAACCCTCATAATGAAACACTAATTAATAAAATAATAATATATGCAATCAACAATTGTAATAAAGAAACCTAAAAGTTGTA...

CDS

1 records

下载 CDS FASTA

LOC131010665
ATGAGCAGAAGTCTTGTTGATCTGGTTCGTACGAGAGCATTTGCAGCTTCTCTGATTCCTCCATTCCCTCTTTTCTCTTCCTACTTCCACAACGATTGGAGGCCCTCTCAACCCAAGCAGCCCAGTATAGATTTCAGTTGTGTTAAACAATTAGATGATGCTATTCACTTGTTTCACAAAATGCTGAGAATGCGGCCGCACCCATCAGTTGTCGATTTCACGAAACTGTTGAATTCCGTCGTGAAAATGAAGCACTACTC...

Protein

1 records

下载 Protein FASTA

XP_057794285.1
MSRSLVDLVRTRAFAASLIPPFPLFSSYFHNDWRPSQPKQPSIDFSCVKQLDDAIHLFHKMLRMRPHPSVVDFTKLLNSVVKMKHYSVALNLFDEMRQSGAPVNEYTLSIAINCYCLLRRVDFGFAILGVFFKSCHEPNVAAFCTLIKGLFLGDKADEAVKLFEKLLRFRICEPNHVMILTMIDGLCKAKRIAAANDLLRRLETSRWWPNVKAYSALLDGLCKGGMVDDALQLLSRMIHEGVPIDVVTYNSMIKGLCDVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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