当前解析结果
SmilChr02G003727| 统一新 Gene ID | SmilChr02G003727 |
|---|---|
| 名称 | SmilChr02G003727 |
| 描述 | kinesin-like protein KIN-7N |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 58896027 - 58904353 / - |
| NCBI Gene ID | LOC131010672 |
|---|---|
| GeneID | 131010672 |
| locus_tag | - |
| NCBI Name | LOC131010672 |
| 原始查询 | SmilChr02G003727 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-7N |
| 产物 | kinesin-like protein KIN-7N |
| Arabidopsis | AT1G59540 (ZCF125)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842245] identity=56.3; qcov=0.698; evalue=0; confidence=high |
| Rice | Os02g0775400 (SIP26)- identity=45.5; qcov=0.315; evalue=1.4e-90; confidence=low |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010672 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057794295.1 |
| 2 | Phragmoplast | Phragmoplast | 0.60000 | XP_057794295.1 |
| 3 | Cytoskeleton | 细胞骨架 | 0.40000 | XP_057794295.1 |
| 4 | Spindle | Spindle | 0.40000 | XP_057794295.1 |
| 5 | Cytoplasm | 细胞质 | 0.20000 | XP_057794295.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:58896315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:58896444 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B134,B83,C59,C9 |
Chr2:58896645 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B25,B59 |
Chr2:58896712 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr2:58896801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:58896823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C87 |
Chr2:58897086 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B28,B64,D9 |
Chr2:58897103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B41,C25 |
Chr2:58897197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:58897401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,A20,C43 |
Chr2:58899037 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | C63 |
Chr2:58899037 |
T |
TC |
1bp_insertion | CDS_variant | 1 | C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794295.1PF16796
Microtub_bd 4-141 aa
PF00225
Kinesin 9-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794295.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 4 | 141 | 9.2e-21 | 75.1 | Microtubule binding |
XP_057794295.1 |
Pfam | PF00225 |
Kinesin | Domain | 9 | 331 | 7.2e-110 | 367.7 | Kinesin motor domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。